Protein Info for HSERO_RS17830 in Herbaspirillum seropedicae SmR1

Annotation: rhodanese

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 293 PF17773: UPF0176_N" amino acids 8 to 99 (92 residues), 99.5 bits, see alignment E=1.2e-32 PF00581: Rhodanese" amino acids 120 to 218 (99 residues), 28.8 bits, see alignment E=1.4e-10

Best Hits

Swiss-Prot: 70% identical to Y2535_CUPNJ: UPF0176 protein Reut_A2535 (Reut_A2535) from Cupriavidus necator (strain JMP 134 / LMG 1197)

KEGG orthology group: K07146, UPF0176 protein (inferred from 100% identity to hse:Hsero_3572)

Predicted SEED Role

"Rhodanese domain protein UPF0176, Betaproteobacterial subgroup"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IQD9 at UniProt or InterPro

Protein Sequence (293 amino acids)

>HSERO_RS17830 rhodanese (Herbaspirillum seropedicae SmR1)
MQSPDTPYVNIAAYKFVSFDDTAEKRPQFLAFCQQHNLRGTVILSPEGINLFLAGLRADI
DAFLAWLRADARFADLIVKESYSEKQPFTRMLVKLKAEIITMKHPLIKPELGRAPFVEPK
DLKRWLDQGHDDEGRPVVMVDTRNGFEVDVGTFDNTVDYRISKFTEFPKVIEDHKADFEG
KTVVTFCTGGIRCEKAAIHMQNIGYDHVYQLEGGILKYFEDVGGAHYQGDCFVFDYRTAL
SPELKETQTAQCFACRAVVTPREQLSPDYVPGKSCPHCAGKQQAAQEASSAAA