Protein Info for HSERO_RS17820 in Herbaspirillum seropedicae SmR1

Annotation: Lipid A core--O-antigen ligase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 402 transmembrane" amino acids 6 to 32 (27 residues), see Phobius details amino acids 52 to 71 (20 residues), see Phobius details amino acids 80 to 97 (18 residues), see Phobius details amino acids 104 to 124 (21 residues), see Phobius details amino acids 136 to 158 (23 residues), see Phobius details amino acids 165 to 183 (19 residues), see Phobius details amino acids 189 to 205 (17 residues), see Phobius details amino acids 212 to 231 (20 residues), see Phobius details amino acids 322 to 341 (20 residues), see Phobius details amino acids 353 to 371 (19 residues), see Phobius details amino acids 377 to 395 (19 residues), see Phobius details PF04932: Wzy_C" amino acids 175 to 330 (156 residues), 70.7 bits, see alignment E=5.9e-24

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_3570)

Predicted SEED Role

"FIG01270238: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IQD7 at UniProt or InterPro

Protein Sequence (402 amino acids)

>HSERO_RS17820 Lipid A core--O-antigen ligase (Herbaspirillum seropedicae SmR1)
MGSFTSFSVFLFSAISLIVPSGFSVGSVLLALGSLTLVNKSVRTTLNREDRLILAVLLAY
FAVTVAMLLLHHESGKEYDLPLRFFLAAAALLLLRAYPPAPAAFWSGLILGGIGAGVFAG
WQYFAHNVRATGYTNAIQYGDISFIIGILCLTGITWAMQQRAARAWVALLIVGGVMGLMG
SLFTGSRGSWVALPICLLILCVYYSRSIPARYVWGSLAALVAAIAIVFTVMPSTDFRARI
SLAFSEASTYMQKKDADSSIGTRMEMWRAGAMAVAEAPVLGMGKAGFVQWETGQIEAGKI
NALMSGNNHVYNEWLDALVKRGVPGLLVLLALYFVPLRLFIARLKSAPEQAKPYALGGVL
LIVNYIGFGFSQVFLAHNSGVMTLGFTMVILWGMLRGEESRS