Protein Info for HSERO_RS17645 in Herbaspirillum seropedicae SmR1

Annotation: TonB-denpendent receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 841 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details PF07715: Plug" amino acids 175 to 287 (113 residues), 33.4 bits, see alignment E=5.6e-12 PF00593: TonB_dep_Rec" amino acids 379 to 811 (433 residues), 128.5 bits, see alignment E=6.9e-41

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_3535)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IQA2 at UniProt or InterPro

Protein Sequence (841 amino acids)

>HSERO_RS17645 TonB-denpendent receptor (Herbaspirillum seropedicae SmR1)
MPARRLARLMAHCLAATPALLAVTCAPTVQAAAAGLVQPQAALFDFQVPAGTMEQALVAI
ARSAGGIVLFDPAAAARLNCAGVQGRFTLEAALRQALAGSPLELVSHPDGSFGVLRASVP
AALSADPATPEHYNPPLPPVLRSGQRDAGDTSHGYADSGFLATESRLATRNEMPLSSLPV
SLQEITGGLIESQQSQSVVSSLQNISSVAYGRGDGVDQAGTLYVRSFVAPVMRDGWGDLV
SLVNATNGRVSGSRAITSLDVPTAAIERVEVLGGADSIIVGGPMEPGGSVNIVTKQPVAD
TLRELTLEVDQRGHRRSALDLGGSLSADRAWTYRTIVSVTHDKRTLDGYDGAREFYLAPS
LGYKDASTSVVAGLSHQVARTPFGGYQSALLGENGPGPDLRSAPWGRADDRSLATKTELF
YRWEQALGEDWRFTSRARINRLRYRAAGYTNCAPVDLDAGTGVCVADQSLLQTDSISLDN
NVSYKIVSGPWQHRIMAGASFSRTRLRSYSDGDNSVAVNVPWPPSQAALPPLSGQPSLTG
GDDAIYTSNLYLQDQITWQRWYALINAGYERERNNFSSDVDADGVLRDTSPPRNVPVYNL
GLAYRLSQNATLYANYFRSFTPGQVLLDSSLNGSRPGINSAPATTGRSAEIGLKLELLER
RAVFTAALFRATHTNVLQSVFADASAPLNRYVLLPSAVSRGLELNLSGRLARGWNLIASY
SYSLFHPAPGPEQDSRLGQFPHHRASLWSTYDLQSEAWRGWGFGLGMTARSGYTAVSDAD
TQVRIGGQTRTDASLYYRRPGSRTTLGIRNLFDRRLFSDFATNLIGVEPGRTLTLTHIIE
F