Protein Info for HSERO_RS17360 in Herbaspirillum seropedicae SmR1

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 164 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 45 to 65 (21 residues), see Phobius details amino acids 86 to 110 (25 residues), see Phobius details amino acids 117 to 139 (23 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 65% identity to har:HEAR0763)

Predicted SEED Role

"N-linked glycosylation glycosyltransferase PglG" in subsystem N-linked Glycosylation in Bacteria

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (164 amino acids)

>HSERO_RS17360 membrane protein (Herbaspirillum seropedicae SmR1)
MAMFGLVHGVIAVLFAAGALALIAIAARMGFEAVMEGWGLPQAQALIEAIGILAAAVVAF
QIAETITEEEVVRDANISAPTRVRRFLSRFFVVVVVALAIEALVMTFRAVHEEPEELVYA
AALLAGTGALLAAWGYFIYCNRVAEELEPDAMEEAKEEDKKLDN