Protein Info for HSERO_RS17130 in Herbaspirillum seropedicae SmR1

Annotation: ABC transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 529 PF00005: ABC_tran" amino acids 22 to 178 (157 residues), 101.3 bits, see alignment E=2.2e-32 amino acids 294 to 447 (154 residues), 117 bits, see alignment E=3.1e-37 PF08352: oligo_HPY" amino acids 229 to 260 (32 residues), 22.1 bits, see alignment (E = 4.8e-08)

Best Hits

Swiss-Prot: 52% identical to YEJF_ECOLI: Uncharacterized ABC transporter ATP-binding protein YejF (yejF) from Escherichia coli (strain K12)

KEGG orthology group: K13896, microcin C transport system ATP-binding protein (inferred from 100% identity to hse:Hsero_3420)

MetaCyc: 52% identical to putative oligopeptide ABC transporter ATP binding subunit YejF (Escherichia coli K-12 substr. MG1655)
3.6.3.23-RXN [EC: 7.4.2.6]

Predicted SEED Role

"Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)" in subsystem ABC transporter oligopeptide (TC 3.A.1.5.1) (TC 3.A.1.5.1)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.4.2.6

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IPK3 at UniProt or InterPro

Protein Sequence (529 amino acids)

>HSERO_RS17130 ABC transporter (Herbaspirillum seropedicae SmR1)
MSAALLEVNNLTVRFGDTVVVDRVSFAIAPGEKFALVGESGSGKTVSSLAVMQLNQDARY
EGSILLDGQDVLAKSERQMQQVRGNDVAMIFQEPMTALNPLFTIGNQIAEVLMHHEGLNA
RDAARRAVALLEKTGIPEPARRALSYPHELSGGQRQRAMIAMALACKPKLLIADEPTTAL
DVTIQVQILALLNQLQREENMAVLIISHDLNLVRHFADRVGVMEKGKLVESASVAELFAN
PQQPYTRKLLQSRPQRNAADVAADAPVVLQAERLRCTYHIKQGWFAKRAFHAVDGVDLQL
RRGETLGIVGESGSGKSTLGMALLRLSAASVAGSIRFDGVPISERPQRELRPLRSRMQVV
FQDPFASLSPRRTVEQIVGEGLELHHPDRSAEQQRQAIVAALEEVGLSAAVLERYPHEFS
GGQRQRIAIARALVLQPELLLLDEPTSALDVTVQQQVLQLLAELQRRHGLAYLFITHDLA
VVQAMAHQVIVMKDGKVVESGATAQVLQQPQQEYTRRLVAAATYAEAAP