Protein Info for HSERO_RS17065 in Herbaspirillum seropedicae SmR1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 358 transmembrane" amino acids 61 to 82 (22 residues), see Phobius details amino acids 94 to 115 (22 residues), see Phobius details amino acids 259 to 280 (22 residues), see Phobius details PF20455: DUF6708" amino acids 106 to 297 (192 residues), 86.2 bits, see alignment E=1.1e-28

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_3408)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IPJ2 at UniProt or InterPro

Protein Sequence (358 amino acids)

>HSERO_RS17065 hypothetical protein (Herbaspirillum seropedicae SmR1)
MDERIFQFKSGQAIPEWDLRHRLHIQRSVGPERKDSSTIFRINSSYMDVTDQPYRDRQWQ
AAGVLTFLLGIAASLFYGTSVMQNSSNNPDSDPIMSIFLVMAAISMLGFFSFKYGRDEFF
SLKRRPIRFDRKQKKIYAIRRRRFFAKPGQGDITWEVPWDENAIFCIHRGVVHHRHVYHI
RHYEVDQDGNVLRAFSIGRKWEGDESLEDLLSQWNYWCWYMNHGPAELPKPLLFFKEKEN
MLESFLFCMYDFGMRASAAYRIIMMPAILLMTSHRLMALWTCRAPIWPDAVVKVSAIEPD
DPFDQPSGPTPVGWAETTHAIDRNEYPDGDKREMKNWSGEKNPTVNALLWAKDVPPEH