Protein Info for HSERO_RS17020 in Herbaspirillum seropedicae SmR1

Updated annotation (from data): ABC transporter for D-sorbitol/xylitol, ATPase component
Rationale: Specifically important for utilization of D-sorbitol and xylitol.
Original annotation: sugar ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 406 PF00005: ABC_tran" amino acids 20 to 162 (143 residues), 112.1 bits, see alignment E=7e-36 PF08402: TOBE_2" amino acids 281 to 355 (75 residues), 41.3 bits, see alignment E=2.7e-14 PF03459: TOBE" amino acids 303 to 354 (52 residues), 23.9 bits, see alignment 7.9e-09

Best Hits

KEGG orthology group: K02023, multiple sugar transport system ATP-binding protein (inferred from 100% identity to hse:Hsero_3397)

Predicted SEED Role

"Glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC (TC 3.A.1.1.3)" in subsystem Glycerol and Glycerol-3-phosphate Uptake and Utilization (TC 3.A.1.1.3)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IPI1 at UniProt or InterPro

Protein Sequence (406 amino acids)

>HSERO_RS17020 ABC transporter for D-sorbitol/xylitol, ATPase component (Herbaspirillum seropedicae SmR1)
MADIHCQALAKHYAGGPPVLHPLDLHIGDGEFVVLLGPSGCGKSTMLRMIAGLEDISGGT
LRIGGTVVNDLPARERNVAMVFQNYALYPHMSVYDNIAFGLRRLKRPAAEIDRRVREVAA
LLNLEALLERKPRAMSGGQQQRAAIARAIIKTPSVFLFDEPLSNLDAKLRAQLRGDIKRL
HQRLRTTTVYVTHDQLEAMTLADRVILMQDGRIVQAGSPAELYRYPRNLFAAGFIGTPAM
NFLSGTVQRQDGQLFIETAHQRWALTGERFSRLRHAMAVKLAVRPDHVRIAGEREPAASL
TCPVSVELVEILGADALLTTRCGDQTLTALVPADRLPQPGATLTLALDQHELHVFDVESG
ENLSLPDAALTAPGSDDGPHGKETKHESGSGAGPYPPGPIVQGLGA