Protein Info for HSERO_RS16690 in Herbaspirillum seropedicae SmR1

Annotation: C4-dicarboxylate ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 498 transmembrane" amino acids 12 to 37 (26 residues), see Phobius details amino acids 41 to 71 (31 residues), see Phobius details amino acids 106 to 133 (28 residues), see Phobius details amino acids 143 to 161 (19 residues), see Phobius details amino acids 167 to 186 (20 residues), see Phobius details amino acids 198 to 221 (24 residues), see Phobius details amino acids 256 to 279 (24 residues), see Phobius details amino acids 314 to 337 (24 residues), see Phobius details amino acids 355 to 377 (23 residues), see Phobius details amino acids 389 to 405 (17 residues), see Phobius details amino acids 411 to 426 (16 residues), see Phobius details amino acids 433 to 451 (19 residues), see Phobius details amino acids 468 to 488 (21 residues), see Phobius details PF01970: TctA" amino acids 18 to 438 (421 residues), 461.8 bits, see alignment E=9.6e-143

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_3331)

Predicted SEED Role

"Tricarboxylate transport membrane protein TctA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8J229 at UniProt or InterPro

Protein Sequence (498 amino acids)

>HSERO_RS16690 C4-dicarboxylate ABC transporter permease (Herbaspirillum seropedicae SmR1)
MFANIYAAFGMVFDPYVLAVILGSSIFGLFMGAVPGLSATMAVALLVPVTFFMPPVPAIA
AMVSATAMAIFSGDIPGCLLRIPGTPSSAAYTDEAYAMTMKGQGEIALGASLVFSVIGGL
FGTFVLILAAPALAELALKFSSFEYFWLVLLGLTCAIFIASDNPLKGFVSLFLGMFIASI
GMGNPAGAPRFTFDQPDLLGGVSLVPLMVGMFAMSEVLRFAVSRDFSMKVAESRVGNVFK
GMWGLMIKYPKSVLRGSVLGTLVGALPGAGADIAAWMSYAMSKKLSKEPEKFGTGHPEGI
VESGAANNSALAGAWIPALVFGIPGDSITAIVIGVLYMKNLNPGPMIFVENPVSMYAIFI
VFILANLLMLPLGFWCIKMAKRILSIPRGILMPLILLFCIVGSYATNNSVTDVGIMLVFG
LLAYVMEENGFPVAPAVLGVVLGGMLEEHFVTSMIKADGQFLAFFERPIAGTLGVITLLL
WLLPLALKLVRRKTLATA