Protein Info for HSERO_RS16625 in Herbaspirillum seropedicae SmR1

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 414 transmembrane" amino acids 21 to 44 (24 residues), see Phobius details amino acids 49 to 71 (23 residues), see Phobius details amino acids 82 to 105 (24 residues), see Phobius details amino acids 142 to 162 (21 residues), see Phobius details amino acids 168 to 186 (19 residues), see Phobius details amino acids 220 to 241 (22 residues), see Phobius details amino acids 261 to 281 (21 residues), see Phobius details amino acids 290 to 310 (21 residues), see Phobius details amino acids 316 to 337 (22 residues), see Phobius details amino acids 352 to 371 (20 residues), see Phobius details amino acids 380 to 399 (20 residues), see Phobius details PF07690: MFS_1" amino acids 18 to 276 (259 residues), 104.6 bits, see alignment E=5.5e-34 amino acids 272 to 405 (134 residues), 52.2 bits, see alignment E=4.7e-18 PF00083: Sugar_tr" amino acids 46 to 205 (160 residues), 63.7 bits, see alignment E=1.6e-21 amino acids 220 to 414 (195 residues), 50.7 bits, see alignment E=1.4e-17

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_3319)

Predicted SEED Role

"Sialic acid transporter (permease) NanT" in subsystem Sialic Acid Metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8J217 at UniProt or InterPro

Protein Sequence (414 amino acids)

>HSERO_RS16625 MFS transporter (Herbaspirillum seropedicae SmR1)
MWLQETTTSERRTLTATFTGYAVDGFDYMIYTFLIPTLLAAWSMSKAEAGYIATGALLTS
AIGGWAAGVLADRYGRVRVLQWTVLWFAFFTFLSGFTTSFGQLFFTRAMQGFGMGGEWAV
GSVLIAETISARHRGKASGLVQSSWAVGWAGSALAFWGVYAVLPPETAWKVLFWIGVLPA
LLTLYIRRAISEPAVYLATQARLRESGQRGNFLRIFHRDLLRTTLLASLLATGMQGAYYS
VTTWLPTFLKTERHLSVLGTSTYLLVLIGGSFCGYLTSAWLSDTIGRRRCFMLFAAMGIV
LVLSYTQMIITDAWMLALGFVLGFFLSGIFSGMGAYLSELFPSDVRGSGQGFCYNFGRAV
GAICPALVGYLSNSLPLGQTIGWIAAGCYGLVIVACLVLPETRGKELEAVAKAF