Protein Info for HSERO_RS16585 in Herbaspirillum seropedicae SmR1

Annotation: iron ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 547 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details transmembrane" amino acids 50 to 73 (24 residues), see Phobius details amino acids 80 to 100 (21 residues), see Phobius details amino acids 127 to 147 (21 residues), see Phobius details amino acids 184 to 207 (24 residues), see Phobius details amino acids 227 to 245 (19 residues), see Phobius details amino acids 280 to 306 (27 residues), see Phobius details amino acids 328 to 349 (22 residues), see Phobius details amino acids 370 to 391 (22 residues), see Phobius details amino acids 397 to 416 (20 residues), see Phobius details amino acids 460 to 477 (18 residues), see Phobius details amino acids 510 to 530 (21 residues), see Phobius details PF00528: BPD_transp_1" amino acids 63 to 248 (186 residues), 50.6 bits, see alignment E=1e-17 amino acids 367 to 535 (169 residues), 28.9 bits, see alignment E=4.6e-11

Best Hits

KEGG orthology group: K02011, iron(III) transport system permease protein (inferred from 100% identity to hse:Hsero_3312)

Predicted SEED Role

"Ferric iron ABC transporter, permease protein" in subsystem Campylobacter Iron Metabolism or Iron acquisition in Vibrio or Transport of Iron

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8J210 at UniProt or InterPro

Protein Sequence (547 amino acids)

>HSERO_RS16585 iron ABC transporter permease (Herbaspirillum seropedicae SmR1)
MHFIGLLAVLIALPILGILCAWFGLDAEGLDALRQQAETVLPGYLATSGWLALMVTLGVV
VVGGATAVTVSLFEFRGRRWFSWALLLPMAMPAYVSAYAYTDFLQYAGVVQSTLRGWFPG
FRMEVRGLPGAICMFVLTLYPYAYLLARNALSERGTHLMEAARMLGAPLSERIVRVALPL
ARPALAAGAALALMETLADYGVSAYFGLTTFTTGIYKAWVVLDDRLAAAQYASLLLLFVT
VLLWLERREQGRMRFAATRGGRGHDGAEARLPVLSRAQTALAWLVCGLPVVLGFVLPVAI
LLRLWWSEAGQGMGFDVGRYAGWVWNSFRFGGMAALAAIVLALALCFALRSGGLPRLQAA
LLRLTARLAGMGYAIPGSVIAVGILLPVAWLQSLWPGAGLGVLLTASSLGVIYAYLVRFT
AVAVQSVESGYTRIPASLDEAARSLGSSRAVIAWRVHMPLLWRSLAVAALMVFVDVVKEL
PATLLLRPFDTDTLAVIAHNLARDERLGEAALPALSIVLVGLAPVLLVMRALDGKRSQPL
QNAAPPA