Protein Info for HSERO_RS16330 in Herbaspirillum seropedicae SmR1

Annotation: xanthine/CO dehydrogenase maturation protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 362 signal peptide" amino acids 1 to 16 (16 residues), see Phobius details PF02625: XdhC_CoxI" amino acids 13 to 68 (56 residues), 61.4 bits, see alignment E=6.4e-21 TIGR02964: xanthine dehydrogenase accessory protein XdhC" amino acids 19 to 334 (316 residues), 304.3 bits, see alignment E=3.4e-95 PF13478: XdhC_C" amino acids 191 to 333 (143 residues), 123.6 bits, see alignment E=7.2e-40

Best Hits

KEGG orthology group: K07402, xanthine dehydrogenase accessory factor (inferred from 100% identity to hse:Hsero_3264)

Predicted SEED Role

"XdhC protein (assists in molybdopterin insertion into xanthine dehydrogenase)" in subsystem Purine Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8J1W2 at UniProt or InterPro

Protein Sequence (362 amino acids)

>HSERO_RS16330 xanthine/CO dehydrogenase maturation protein (Herbaspirillum seropedicae SmR1)
MTTWLAALRRMQRDATPAVLVTVAQIQGSTPRAPGARMLYTADTQFDTIGGGHLEWRAAQ
MARAMLQAPLGQLAGQRRLERIALGPSLGQCCGGVVFLCFERIATDDEAMRTWQALEQSW
SSGQDLWRAVPLDHAGAQLLIEGNIEDLPPDAYAHGLPPDTLGQQRQTRLLRDAQGRRWL
LDWCHASRPQVVLCGAGHVGQAIVAVLSTLPCRVLWVDAREEMFPPGLPPQIRTEATDVP
NAAVDMADPGAYFLVMTHSHALDQQLSERILKRQDVAWFGLIGSLTKRRQFEHRLAERGF
SAAQLERITCPIGIDGIDGKEPASIAIAVVAQLLQLWEKRQAAPELQPSPAVLATHALDG
RG