Protein Info for HSERO_RS16150 in Herbaspirillum seropedicae SmR1

Annotation: arginyl-tRNA-protein transferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 242 PF04376: ATE_N" amino acids 20 to 90 (71 residues), 88.8 bits, see alignment E=2.2e-29 PF04377: ATE_C" amino acids 110 to 232 (123 residues), 157.3 bits, see alignment E=2.7e-50

Best Hits

Swiss-Prot: 84% identical to BPT_JANMA: Aspartate/glutamate leucyltransferase (bpt) from Janthinobacterium sp. (strain Marseille)

KEGG orthology group: K00685, arginine-tRNA-protein transferase [EC: 2.3.2.8] (inferred from 100% identity to hse:Hsero_3223)

Predicted SEED Role

"Arginine-tRNA-protein transferase (EC 2.3.2.8)" in subsystem Protein degradation (EC 2.3.2.8)

MetaCyc Pathways

Isozymes

No predicted isozymes

Use Curated BLAST to search for 2.3.2.8

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8J1D5 at UniProt or InterPro

Protein Sequence (242 amino acids)

>HSERO_RS16150 arginyl-tRNA-protein transferase (Herbaspirillum seropedicae SmR1)
MTHLKDLPFSTLQFYATAPYPCSYLDDQQARSQVATPSHLINADVYSELVKTGFRRSGIF
TYRPYCDGCHACTPVRIRVADFQRNRSQRRAWERNRGLQTLVTNLTYAHEHYELYLRYQC
ARHAGGGMDQDSRDQYAQFLLQSKVNTRLVEFREADGTLRMVSIIDVLNDGLSSVYTFFD
PDLPTASFGTYNILWQIEQARQLDMPYVYLGYWIKESQKMAYKTNFQPLEALYDGEWSPL
EG