Protein Info for HSERO_RS15945 in Herbaspirillum seropedicae SmR1

Annotation: peptide ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 305 transmembrane" amino acids 36 to 57 (22 residues), see Phobius details amino acids 105 to 131 (27 residues), see Phobius details amino acids 151 to 177 (27 residues), see Phobius details amino acids 197 to 213 (17 residues), see Phobius details amino acids 220 to 248 (29 residues), see Phobius details amino acids 269 to 291 (23 residues), see Phobius details PF12911: OppC_N" amino acids 24 to 74 (51 residues), 53.5 bits, see alignment 1.7e-18 PF00528: BPD_transp_1" amino acids 121 to 301 (181 residues), 89.3 bits, see alignment E=2.6e-29

Best Hits

Swiss-Prot: 39% identical to DPPC_HAEIN: Dipeptide transport system permease protein DppC (dppC) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

KEGG orthology group: K02034, peptide/nickel transport system permease protein (inferred from 100% identity to hse:Hsero_3181)

MetaCyc: 39% identical to dipeptide ABC transporter membrane subunit DppC (Escherichia coli K-12 substr. MG1655)
ABC-8-RXN [EC: 7.4.2.9]

Predicted SEED Role

"Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)" in subsystem ABC transporter dipeptide (TC 3.A.1.5.2) (TC 3.A.1.5.2)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.4.2.9

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8J194 at UniProt or InterPro

Protein Sequence (305 amino acids)

>HSERO_RS15945 peptide ABC transporter permease (Herbaspirillum seropedicae SmR1)
MSATTTTMPPTPLLQGALPPLPAWRRKLRRLLGHRGLMIGAAVLAVIVLAAIFAPLLAPH
DPFDQDVTARLIPPVWQAQGSWEHILGTDKLGRDYFSRLIYGARVSLTIGLAAALISGLI
GTTLGVLAGYFGGRTDAVISYLITTRLAMPVVLVALAMASLVGGSLKVVIVLLGLLLWDR
FAVVTRSATQQLRDAEFIAAAKAIGASTPYILLREILPNIMGALIVVVTLEMAHAILLEA
TLSFLGLGVQPPTPSWGLMVAEGKTYMFFKPWVIVIPGVALALLVLAINLVGDGLRDVNA
PDGRN