Protein Info for HSERO_RS15310 in Herbaspirillum seropedicae SmR1

Annotation: sulfoxide reductase catalytic subunit YedY

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 322 transmembrane" amino acids 30 to 51 (22 residues), see Phobius details PF00174: Oxidored_molyb" amino acids 102 to 257 (156 residues), 110.1 bits, see alignment E=4.4e-36

Best Hits

Swiss-Prot: 71% identical to MSRP_BURMA: Protein-methionine-sulfoxide reductase catalytic subunit MsrP (msrP) from Burkholderia mallei (strain ATCC 23344)

KEGG orthology group: K07147, (no description) (inferred from 100% identity to hse:Hsero_3051)

Predicted SEED Role

"Putative sulfite oxidase subunit YedY"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8J0I3 at UniProt or InterPro

Protein Sequence (322 amino acids)

>HSERO_RS15310 sulfoxide reductase catalytic subunit YedY (Herbaspirillum seropedicae SmR1)
MLIKIRPDQIEIPTASEITPKDVYLSRRSFMARVAAGAALAGGMGALPQAFAQQGRKLPA
KLNNAYAVMDKQTAYKDATSYNNFYEFGTDKADPAKNAGTLKTSPWTIDIEGEVKKPFTL
DLDALTKLAPLEERIYRLRCVEGWSMVIPWIGYSLSALIKKAEPTGNAKYVEFVTLADKK
QMPGLSDPILNWPYREGLRLDEANHPLTLLTLGMYGEVLPNQNGAPVRIIVPWKYGFKSA
KSIVKIRFVKDEPKTAWNLYAPQEYGFYSNVNPGVDHPRWSQATERRIGEDGFFAPKRKT
LMFNGYNEVAGLYTGMDLRKFF