Protein Info for HSERO_RS15305 in Herbaspirillum seropedicae SmR1

Annotation: sulfite oxidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 212 transmembrane" amino acids 20 to 40 (21 residues), see Phobius details amino acids 58 to 76 (19 residues), see Phobius details amino acids 88 to 106 (19 residues), see Phobius details amino acids 125 to 145 (21 residues), see Phobius details amino acids 157 to 175 (19 residues), see Phobius details amino acids 182 to 203 (22 residues), see Phobius details PF01794: Ferric_reduct" amino acids 56 to 169 (114 residues), 69.8 bits, see alignment E=1.1e-23

Best Hits

Swiss-Prot: 62% identical to MSRQ_HERAR: Protein-methionine-sulfoxide reductase heme-binding subunit MsrQ (msrQ) from Herminiimonas arsenicoxydans

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_3050)

Predicted SEED Role

"FIG001196: Membrane protein YedZ"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8J0I2 at UniProt or InterPro

Protein Sequence (212 amino acids)

>HSERO_RS15305 sulfite oxidase (Herbaspirillum seropedicae SmR1)
MQLAPAALHNLKPRTVTGLWWLFLALACLPLLRLVILGFTGGLGANPLEFITHSTGDWTL
YLFCLTLAVTPLRKLTGLNWLVRMRRMLGLMAFFYLCLHFTTFVWFDHFFDLGEIWKDIL
KRPFITVGVIALLLSIPLALTSTNGMVRRLGGKRWQALHRLVYLIVPLGVLHYWWDKAGK
NLIAQPLLFAVLVGLMLVLRLVWRKGRAARPS