Protein Info for HSERO_RS15275 in Herbaspirillum seropedicae SmR1

Annotation: centriolin protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 517 transmembrane" amino acids 15 to 38 (24 residues), see Phobius details amino acids 48 to 70 (23 residues), see Phobius details amino acids 158 to 179 (22 residues), see Phobius details amino acids 182 to 188 (7 residues), see Phobius details amino acids 212 to 236 (25 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_3044)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8J0H6 at UniProt or InterPro

Protein Sequence (517 amino acids)

>HSERO_RS15275 centriolin protein (Herbaspirillum seropedicae SmR1)
MKSVSMNKPSAGDPVYLAPWLGTLAVFAAYVLVNLWLYQRVMELIAHAANPFFVIVLVVI
TVLGQVLTIWQAKRILAEGRQVDLLSGRVKTFARDGRTEGAALEQELVKEDRNFDIDRLL
RQLKNADGRTIRFDRTQLQHQFDGFAGDLQRRTLLPQYIANTLIGLGLFGTFLGLIVTLK
EVALLIGMFSSIGTEGGSDMMGKFFERMSGPLAGMGDAFVASLLGLGGSIVNNVQLLACK
KLQRLVSARAEGFYMHAAEFICTNSEDVIRAAKSDTALAESQLQEIRTIRGEMCRQTDAI
LLATSRMRQASEPLAKGLETLQKQLSAQAQDRPQLEQIAAAMEQRLGSLVNKFEETRQAH
QGLMGAVSNMETHLGELAKASGAQTEQQQDVSRKLSELSSITVQQSELCRNALRENSDQL
RTTLHEDLHQIGMRLDESLRDQREQGQMIASIQGSARSVVVAVETAGVQLLQQGEQLPKQ
ITDLIARIEKIDLSLEAAKGGSWQQGEVGPAPEAPAS