Protein Info for HSERO_RS15270 in Herbaspirillum seropedicae SmR1
Annotation: hypothetical protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Predicted SEED Role
No annotation
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See D8J0H5 at UniProt or InterPro
Protein Sequence (3159 amino acids)
>HSERO_RS15270 hypothetical protein (Herbaspirillum seropedicae SmR1) VDGKERVDEGQGERVQPADEVMSQEQSLASAEAAMSARHVSEEEADVPRADGEDSSERMQ LAQADSDSSSNAAAVPAARSNASDAPSSVGEELLRQAAPVPRSREISFLDQLDDWLESDM ALPVGLGAAALGFLALSGGGGGGSSGAAAAEAPPPAVEPPRNEWLMTVTPAAGVFLPNAT VKLIAKKLMADGSWQEVANSTAVDASGRMTLKVAKGSLTAKDVIRLELSDTDPAGKDYKD EVAGAQTLGGLKLEAYVGAWNADMAVTINPFTTMVVHKLDEAANAANAGGARGNSAVVND AGAPGSAPGAGGAGAPGNAPVAGGAGAPVNAPVAGDAGAPVNAPAAGGAGAPVNAAAANA PTTPAYGADAAKFEAAIAKAFGIQSGDLLHTIPILLNGRPVAGASADAINYGLALGILSG MTQAQREAGAANPLQAALDLLKSAIQVNGGNVTFALETLRKSLITGSNIDGGLDAGAAKL HAAAVEDGNNSTSTIKGAQVPYLQVDTTQEKPYAGQTKPVWADAAVSFSSFTNGGLSLKV APAASAKVGDQLLVEFLPLDTTNGRLQGGGAKPFTFKYTYTEKDAEAVRLSAGDSSNNGI GSFTLVVPTFDESAQFSATRTSVLRTATASSTPGSAPSLLDVNNDGVYRINNSEYGYQLR ASGAVMGAFASGATLNISTQSIGVEAAPNATGGVLFNGSGVPGASNTVRFSVAIGQKINW SGADPTLEVRVANHPTPLEATLVSGRNADVLTFKLDLTKPANKNLEGALSVAAHALKFSP DTILSDVPGNTLFKTQDGRSWIDSKGSAVADIDAALNVNTALPNSGFSIDTTPPPTPRLT LPGRPAFDANNYAPDNAKPVSGSLNAAPAGAKFGEHAVVTNEPRIPFKVSFDAADNAQLK QGDRVKLVVDFPGTQGREIASASLSKDTGGNWTATFDPASYSENIQQLITRFKTTTDLDK VTFSAVVVDQAGNQSVPGSLKNFAEGGVDNIWIDLKAPAKPSLVALNRASDTGRDDAPDT RADGITSMAKPTLQIEGGEPGGFARVYANADGTGLLGEGRISNGQSLTGGSVNSASVALT GGTGLVNGANTVYVQLIDAAGNKSEIQSKQIEVLLPLPMDARADIALTSTAPHNGFYVTG DVIEVQVTFDREVYLKQGKVTDQLYVNLIQDGTGANAAKILKATYQSGLGKGTTDPGSKV LTFKYTVGAGDDAPAGVKYKVGDLINVGHVLEDKAGSDVPGMSKPYTGAGLTIDTVAPPS RHSRWMPICYPTRHAPRQRVAKGQPLKVRGSEVGSKLAIKLTNASGVVENLDPLTATGAG QTINLTDVQIAKLGDGLITVTAMASDTAGNVRAAAETKFTLDTTAPAVSASVTATGGGQP PAVTKEQISFVVTFNEKLRVPVTIDNFTATNGTVNKVEAVTGAGNTNANSYTVLVTPNPD MPAGNKVELKLKANGATPVLDVAGNPAELGAVIASQAIDTRGPTVISVPADNAPPAPPTM NKDIVFNVRFDEMGSVSQMGNIGVGNFKAINGKVTKVEPVGASRTEYNVTVKPNAELTGN SNEVQLNFFAVADIRMGQGSAGVADSLGNAARDQPNIARQIIDVQQPSITADGVSVSSRS LASGNPDKPGYVHAGDTVRLAVVFDEAVTVSGTPKLNLQVGANTRSASYKTLSTDGKTAY FDYVLTAADTATDGISIPANALQLPTGARITDLAGNAAKVDSSVVALNPAYKVDNSAPTL TEVKVSEMTADNGSGIYKAGSVITVQAKFSEPVDINTTGGAPRIKLTIGGDERTAAYVDR VPGDAPDVLKFSYTVLSGDNAPAGVAIPASPLVLNGASITDVSGNRAVLTLGGVQPNASF KIDTTAPTVTAVAIESASVSGTEGNYRAGDVITAVVTFSEEVKLAPNAQASLNLMVGGDS RTATLVTPTANAASNTLRFSYTLQSADADSNGISIAPNSLALAGVTDKAGNAAAPAHVAV ADNPLFKVDNAAPTILSFSTTTPDGTYNIGKVINLRATASEELRPGAKITVTLDNGDTAV LTRDASNRTLLEGSYTVVGGKPSTNDLTVTSFTQAAKDLAGNDLLTTMPAAGKNLGDNRA IVLDAMMPPQPTMFRLDAASDGGASPNDGLISEVLPTFHFDGLVRGATVTVTGTFKGVTQ TLLQFTASATAQDQKLTTPLTDGVYTDISVIQTSPSGNASQPRLLGNVTTPGSLELSTAA PGVASQLVFDIDQDLQTEASLETGAPANAPRDFITLIRTPKFNFQGGNDGEVAVLFRDTN GNNMVDAGEQVLGRQIIGVTNATNYRLQPGTSGNGLNGHYVEVAAENALGNGPYTDIKLA LQSKYGTYGTAVPMARGATSGSGAGGITVINNKPVPDITGVTTNATAGESSAATMSFNVR GGQTGARIIIKADRLDDNGTLIAAQQEIGRGVPDGNGVLTLQVGQFNGSYGNFKATQDYA GRISNVAVTTVTNTGPQPLGTITWDHLPISVTASTDLAANSRPGTPFTVKFDFSKAPNGF AQDDIAVTGSGVLSAFAPVLGSNNKRYSATFTPTDATVTRATFQVKDGSYTEPNNQSGAA SNKLELVFNRAGAVAVSGASADGKPQLGDTLTATVSDPDGVKSDVPVAYVWKAGGVAIVG ATGASLRLTDAQMGKAISVEARYTDNLGLAEVSSSASTPNVTGPNAPGVLKFTVNGQETS VVRLGDNVTAVLSDGDGFDPARVTYSWRGERLARPLKGADNATGSTFQIAQDEDVHSFGT TQILVQAEYTDLHGTSERVSGYAYLKYPQRPGTVVFDALNPPNTPYRSGDELHAIVKDDN GTGNGGVTYTWYANDTVIPGQTGSHLQLIDAYRGKAIKVSVSYTDGEGLLETPTSQAIRV EQPNNNAPVGAVTLAGSGELGTTVTASNTITDADGMPGQITYKWFASGDAATKGDLITAP VFVNNDSSKLLITSDLVGKSLKAEANYTDGQGTDEKVLAATAKTAGWMTSVTLGNLSYAQ FEAQPQVVSGAKLISRHPTSNVFILDVNGDGQITAADATTYITSLDANGSISFTTEAGRG KATLLAANSPLWATLLPQPAEWGPANGVFGLPARNGQPAVTGGDFWTSTAGTAADSHQVW SKSGAADGTPGAYEQSNASYMNDPNRLHFNVFQVSVLPA