Protein Info for HSERO_RS15260 in Herbaspirillum seropedicae SmR1
Annotation: cell wall anchor protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Predicted SEED Role
"T1SS secreted agglutinin RTX"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See D8J0H3 at UniProt or InterPro
Protein Sequence (5913 amino acids)
>HSERO_RS15260 cell wall anchor protein (Herbaspirillum seropedicae SmR1) LAAADGVGGNAPLLPSLDDYARVGVHAIKKSFPNNAALQGNVAGLLNQAVDASPRGQIDT VAKLDTLAAIAAKVVALAAGKPVTLTLDEINQLHLNPPLTAAQLPAVLSGIAGSADDGSS VNTLARLSDVAARALAASEKIRAYAEDASRTAPTQQDYHDLGIKGAEDDLRVGAFNAALA TASVDAKRVALPSQVQELADAYLRILGKAGDLAGARPDPLLKDYSAIGATAPRDENGKAL VNSVLAGKQPQELANIATLNQLVAAANALENLAAGDASVLSGTSSAEIVADLKGKLALLG VNNLNDGESPSVINAIKASADDGSDINSQGKLQALIDSAARAQQKINAYADDATKPAPAV SDYVAIGVTGVKEATLDAINSALASTPVTSAQTSSPDLVQTIVNAYGVILAAADGRAGNA MRLPTVQDYQTIGMGPDLLAILQPAANGAASPVLGMLNTLVDAQPLSNVNTLVALARLAD TAQDLIFQAKAGMGDALVTQAQLSAVGITGLDGRSFRSVLAAIAASPDDGSGIIGTLPAG GLKLQALADNARLAQAKIDAYADGIPSAAAPVAADYRSVGLDLGALFKNATADVAVKALN SVLQMPAVTAAQVNPPTKLAEIASAYDLVLAAADGKSGADGQPSAEALALTVEVLAKVGV TGLAADEPQTQALLVSNMQRVLDAMKPATAAIAANLQASADALVKISHLADGVADNGAAV DQFVNALASLQAAGATINDAAVAKAAANAIDAVDYASISTPEKLQALIDGYARILAEANE AEPAAGSPSPNQDRTPDATPGSDPLLIDFAAIGAQLNGLTVNPGNAADQAARLGLLDDSL KRKSRSQVDTVSEITRLGLAIDQIMQAAALPAGAPQPALTGEQRSQWEDTFRTLGINGVD TGADGNLELVLTRLSGIGVVNVDTVAEVQGVVDSVNQALLVIMNYATDSAKNPAPVLTDY LAVGVDKGPNAAAVSADNLGAINAAVARLTRQDVDARSKLKVIINAYNAILDAADGKDGD GSGAALTPDLYLSIGVALGAPQIGMGSVSQKAGGGKTILNPDADKLALFNSVVGAQGKEG VSSPDKLAALAATSADLIRLAKESKDDPVVGNISTTLGLKSLQALGLVALGNSAAQNAFL DAVRFKGNASDPVTGQPSSPDTAATHDVSGVRSFTQLNVIATSYAKVLAYVNGAGSPADA PTQADYQAIGVSLPQALPATAASALELLNSAVHAQASTASVDSVGELNRLAITVDKLMQV AAVAPLPDRYPVQYPPTSSTLKPADLSALGLRNMDGDTLAALLGKLQTTANDGSGAQSVA SLQAMADAAIAAQRKIVQFAQDNGGAAPAVADFDALGLQLPADGSGSSAAYLGAINDALR SDSITGRQVQTPAQLQGLVIAAQHVVDAANGNPGDASPKPTADDFLALGLAKSKIDNAGA TGVAMLADTVDASTLSALTTDENGKSIALPDKLAGLLNLIQSLMVTVAGGQANPPLDAVQ LGKLGVKFVDLSRNADGSLQNWPAIFAAIAGSKKDGSEVNTLEKLQNLVNRADASQVKIR VYADDVVVDGDPTSTPTVEDYKNIGMVGQADAVGVRAPLVTADKLSAINAALRTPSINAA QADTPAHVREVVDAYLAILNAANGPLPDNAAALKSSFFKAIGVTIDGVTTNTGKPTDGAV QSLLFTVIGGKLPTEVNTPAKINALGMLVNKVISQAQASDDAARVSAAELAQLGVTTADG GVLTSEDPAAVAAALYAIRAGADSGDDVNTLARLQTVVATGLTAYHKILAYANMSSIPGG FPDDAGRPTGDDFKAMGLKVPASVLADKAVGASASLLTAVIGAAQIDTPAKLQAILDSWD QLFTLVNGRADTAALNDTTRANFGKLLGAVGVSVDAATKPGALDLLQTALDQQSDRSVMN TPAKLEGMLTTVQSMLNLAGAAQTFAADRLPPSLGAADLIALGILPPAANAGAAAATLSA MSAQTDVSKIDSLAEVQALAGLAMKAQVKISAYADDARKPAPTAVDYLAVGLVKPDGSVL VTGDKLVALNSTLASNTINSPQAGDPAKLKGIVESYTRILEGSATNGAAPGLDDYLKVGL PSVTAQNKDLLDGVIQKLGADRIKDQSVLQKAADGVARILALADGADNTAAAERPSADDF AALGLAMGNAATAKDADGSAAALLGSAIDRMPAASVATVGKLQALVDTVNKLMDNAAGVA GVAAPTVADLQLLGIDISARSVAQQGAILGAIGTSGADGAQINSVPALNALAERAVKALA KITAYAQDNTGASLGTPTADDYTAMGVAGVSAASVGAINAALATTVVDASRAGTQPQVQG IASAYLKVLAAADGQRAIPDPVGSANLPTAGELASLGVGVNAATDAHRVSLLTTALDALS ADRVNTPAKIDLVNVSAGKMVAAAGNAGLAAALTLDDFTALGVQGLDEAFLTNVQALVAA SEVGRIDSSTRLQALVDGLLKDLKIIRNYADGVANNDATLGPVGTVLTPTVNNYGRAGVV GVGADTLASINAAVKALGRSNLVDSKAKLQGVVDAYQHVFQAADGIAGNLPKPVTREELL RIGVPGAKLPDPVAGGLLPAESARASASLTLLVTALDAQASRNAVSTPDKIANLADLATQ VANYVAGAPGATAPSGNDLGMLGVRNILGQTDGNTPSTMSLINGGLSTLGSDGLGKLTLG LVQTAATAAAKIRGLASAGSIISDANRPAADATNADGTPRAGAPLTFDEFRALGLAVDNA PANLKLLNEAFNARPNFASVSDPAKIAALNLVDIVNRVMRQADADLRPDQAPAGISLAEW TTLGLSNTGANPEVTAASISAFMAAIKARSPSEVDTLAELKAVALAARAAQIKISGYAER ESSGNVAQAGADAVTPTAKDFADMGVRGLDKFGAATPGRADAMPEGLFTVLSTLASAPVN GARTATAELVQGIVDSANKVLALADGRANQSANVPGQEDYRLLGADLDGIGVARNKGNYL TLLNSVIDPLTADKADTPAEWLALATTAAKVLDAAGGGVVLPTRADLLQLGVSGFIEADL PAVQRKLQQVPADKLDSINTLAGLQALVDKAVAGQDKIRAYAGDSNNAAPTAQDYADMGV LLPTAPATVAAAILSAANKALASGPVGPDQAGSPDLVQAIVNSYAKVLALADGAVNAAPA DLPTAQDYSNIGMDRAMLGKLGDPSRLLLLNQLVDGAPNAAAVDSPNSLNALAFIANKVQ DIAAQQTGDTVAPENALSATDLATLGIKNLSAPETDAVVAALQSKNPVDVDTLVELQAMA VAARAAINKIIGYADRNAGDAPQVADYLAIGVHGVADVGAAANKEAINAALATGAVDGSD VSTVKAVQALVDSYNSLLRQADGMPSNTADDKLAGADDFANIGVDLGRFAGLDGGGAGAT ENAVKLLSSIVDSRAAADIDTPQKISAFAAMVVKIALTVQGDNSNPPTVADFAALKITGV NDGNLALVLAQLARQSDDGSNTNTWARLADAVFTVTNVPAINTIAGDDIINLAERNAGVT LTGTAGKDDTVTLFYPDGSVMKSGIVTRDSGTGTSVWNWSYTLSDADWKALGAEGANGID KIIGIQSRNNVKGIDSIKVTHTVTLDTTIPVFGAPVRLELDSGQSASDGVTNNGKVLVNG VEVGANWSYRIDDGPYQPGGRGSFNVATDGAHTVKVRQTDKAGNDSVEQTLVFTVDMTAP AKLSAALVKDTGSSSTDRLTSDGSFSVNGIEAGASWQWSEDNGTSWIDGVGVGARVKGAA DGTGFVDGVKNVVLRQVDVAGNVGPVSDVLSFTLDTTAPGTPAIALRRDTGISGSDRITN DGTVGIDRLEGTSSWQYSVDGGTTWIDGSAISVKFPGAADGADGSDGAKNVLMRQVDAAG NASAPTARYSFTLDTTAPVAPGLSLSNDTGPSKTDRVTNDSTLNVAGLEAGASWQYSTDN GTTWLAGSGSSVRLKGLPDGVTTVIVRQMDVAGNQGPASESFSFVQDATAPAKVSMVLAR DTGASTSDRITNDGTINLTGLENGATWQYSLNNGGSWTAGSGTSVKIKGAVDGVGNFDGN KTIVVRQTDLAGNNSAFSDSLAITLDTLAPAKLSLALARDTGVINDKITSDGTVNVTGLE ANASWQWSTDGGVNWSRGSGTSFLVSGDGPKAVMARQSDLAGNLGAVSDVLSFTLDGGLP NRPTLSLARDTGASATDLITSDGTINIGKLDPTGSWQYSLDGGANWLNGTGTSVRIKGAS DGGGNTDGVKNVIVHQTSAAGLTSPDSDVLTFTLATGAPAKLDLSLRNDTGSSATDRLTN DGTVDISGLASGATWTYSTDNGLTWSAGSGTSVRLTGDGNKRIQVRQTDAAGNVGPISDS LGFTLDTRVPDPVTLQLRNDTGISSTDKITKDWDIIILGKLVNGTYEISLDKVNWYSPTG FAANEKANAEKGIVADPHKTVYVRQFDAAGNVSPISEPLDFIRDVVPPAKITASLMKDTG VSASDRITNDGTVGVSTMESGATLQYSLDGGVTWLNAVGNNFKVQGAADGGSNTDGPKSV LVRQVDVAGNEGQASAVLSFTLDTLPQGKLGLALANDTGTSSSDGVTSDGTLNISGLETG ASWQYSLDDGSRWVNGSGASVKLSGDADKSVVVRAIDVAGNTGPKSDPLRMTLDTRADAP TVDMMSPAGKTSDGASVSTDGSFMLSGVAEKGAQVAVRRSDGQVMGSVQASTTNGSWTLE IKGNVQVSGLKRDDGSDSDANGMYRLLSASDLAVLQKSLVVEVFAGDGSRVDLSRPAYAK AIGAQSWYLFATVDGGYMIAQQGNAKEWYFQWNVGAPQIQQPEDVSSWGLATMSFSQIQI EAQQNGGQSSGQTLQPGATVINSNGTRTRTWTYWVEQTDLAGNLSPRATFNVLVETAAPP TLDLDAAVARTQTTALRQSSNSELRAGTAFLADVAAPLKNSTTTIKVVFGGPELRVADDR LLLDALVALDQNLAPVKGKTVGGVNDVSYVYTAATRTLSLTKTLGGTFTGQEVEAIVENI KLQNVAPTPGRRTIDISLVDAGKLASPVVQATLAISSDNLLIDLDPKTTGAQLAATQIVT DAAVLAAGVAFDANVGAPSATTARLLRVSLGGAGLNPKSDKLMLDTPLDLSASLATVSGR TVAGITGLSYTYDAASRTLDIAKTDGSTLSGSQVQSLVQSIKLGGAALGDGVRTASFALV STTGETGGASTAALMVDTRAPLVDLDGALPGVQNSASKSISAARATAGESLFPQETVVQQ ANDIVSIKLAMSGAALDLARDKLVLDQPLDLNTSATTIGNRVVGGVAGLSYGYDDASRTL SISKTAGTAMTSDEVSSIVKAIQFKNAAPQAGDRLASLTLTDLAGNRSTASVKLSVDTTV PASLKATLAAGNQLSYKMLSVPDVLGPINKHTLSNGESVDLSSLMPGSGDAVSLLSSLKG IYGEWGGLAFSGNGNTTNPNDRSVIGFSSSPGFDHSFRLIHQNNRLVMGESYFFTAPDAK TLVLNAQAGFDDVNTDVFAFNPDGVPMDKGYDIGNLRLLFQAPTANVNTQPTIQVSFDGT RAAAGDVIRLMEGGQVLASRTLSDADLGSSNVTLSLTPASSLGAGQHTLSSKYIDVAGNT VTGNDIVFNVQGGATAPVLSNLKVSGDGQAAQAINDSTTRYAMVSAAAGDSTGSSGLQHQ LSFTGTVGTAGSGHSYLVTVSMGGKLLAFNQFAAGDFKLEAPANVLAPGFYKDLSIVATD VTDGPSNGQSTAIGGQTLGWYWAPQSLTNLTAGAGDDMIPLGAAATANGIYNTEVQTGAG KDTLVVGASGATDSARLMARVSDFMVGMDKVSVAGQTVTAANLDRFVTASAAPANGTILS IDLDGPGPGSLTYTLLLVNVQYAQSNTHTIFGV