Protein Info for HSERO_RS14700 in Herbaspirillum seropedicae SmR1

Annotation: amino acid ABC transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 291 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 40 to 60 (21 residues), see Phobius details amino acids 66 to 86 (21 residues), see Phobius details amino acids 93 to 112 (20 residues), see Phobius details amino acids 132 to 149 (18 residues), see Phobius details amino acids 178 to 200 (23 residues), see Phobius details amino acids 217 to 242 (26 residues), see Phobius details amino acids 254 to 272 (19 residues), see Phobius details PF02653: BPD_transp_2" amino acids 17 to 265 (249 residues), 147.5 bits, see alignment E=2.2e-47

Best Hits

KEGG orthology group: K01998, branched-chain amino acid transport system permease protein (inferred from 100% identity to hse:Hsero_2933)

Predicted SEED Role

"Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IZT2 at UniProt or InterPro

Protein Sequence (291 amino acids)

>HSERO_RS14700 amino acid ABC transporter (Herbaspirillum seropedicae SmR1)
MGFMEWWDGFWATYNTVIFSIGVNAMLALSIYVTLSCGLLSLANAAFMGIGAYTASLLTM
QFEMPFPIALAAGGVLPALVALVIGIPTLRLSGVYLAMATLGFGEVVRVIVLNLDITGGP
MGLNGVPPITEWWHIVLLLGVTIYVLARLRRSKIGRAFEAIKEDEIAARLMGVNVAGYKL
LAFVIGAAIAGVAGGLNAHFTFTIGPNNYGFENAVDILTMAVFGGTSNLIGPMIGSTILS
LLPEVLRHFKDFRLAINGLILILVVLYLPKGIWDPRRIRAFLGRNAEKKVK