Protein Info for HSERO_RS14420 in Herbaspirillum seropedicae SmR1

Annotation: calcium-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 576 PF00353: HemolysinCabind" amino acids 1 to 13 (13 residues), 8.3 bits, see alignment (E = 0.00026) amino acids 15 to 37 (23 residues), 18.4 bits, see alignment (E = 1.7e-07) amino acids 44 to 70 (27 residues), 27.5 bits, see alignment (E = 2.4e-10) amino acids 63 to 88 (26 residues), 24.1 bits, see alignment (E = 2.8e-09) amino acids 135 to 168 (34 residues), 27.7 bits, see alignment (E = 2.2e-10) amino acids 423 to 456 (34 residues), 25.8 bits, see alignment (E = 8.5e-10) PF06594: HCBP_related" amino acids 499 to 535 (37 residues), 39.2 bits, see alignment 5.4e-14

Best Hits

Predicted SEED Role

"Alkaline phosphatase (EC 3.1.3.1)" in subsystem Phosphate metabolism (EC 3.1.3.1)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.1.3.1

Use Curated BLAST to search for 3.1.3.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (576 amino acids)

>HSERO_RS14420 calcium-binding protein (Herbaspirillum seropedicae SmR1)
GGAGNDVLFATNGEEINGNGGDDVIYGGDGDDTLVGGTYSALARGETDNDVLYGGAGKDS
LSGGVGNDLLDGGTGDDRMYGGAGDDIYVVDSAGDGVFENADAGRDTVLAGMSTTLGENV
EDLRLLEGGSYNGTGNFLDNRLTGNSQDNILDGLAGADTMMGGQGNDRYFVDNVGDQVIE
EAGEGIDTVYSTVSMTLGANVENLTLMDARTPVHGEIYGQDALIYGTPKSYLMDYRQGDA
RPGFLGTCGVTSVANMLTMAGVNVTEKETLQRAIDRDWCDSDPSLPITLRGGVTCNDLAE
LMGSFGVAGEVDYRYDEARLVKLLKGGHVVTLCADAAVFRDMSGYLAGKRVGFHAVAVSG
VACSAKTGEVLGFYITDSGPGRYSEMNRFLSVGDLRNMDAHESALIYSVDPAKLLHRDSS
ATGNELDNILVGNQDNNLLTGAKGNDTLTGQAGNDTYVFGKGDGRDLVVDQDATAGNIDT
IKFSDARQTNLWFSQVGKDLQIDVLGSTDQVTVKDWYAGADNRVERIKTADGKTLYDSDV
DKLVQAMASFDPPAATQTSWTDGQTSKGKVLLTVTH