Protein Info for HSERO_RS13970 in Herbaspirillum seropedicae SmR1

Annotation: diguanylate cyclase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 561 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 266 to 284 (19 residues), see Phobius details amino acids 293 to 314 (22 residues), see Phobius details PF02743: dCache_1" amino acids 41 to 273 (233 residues), 62.3 bits, see alignment E=7.4e-21 PF00672: HAMP" amino acids 312 to 360 (49 residues), 39.7 bits, see alignment 7.3e-14 TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 366 to 530 (165 residues), 136.3 bits, see alignment E=4.1e-44 PF00990: GGDEF" amino acids 370 to 527 (158 residues), 158.5 bits, see alignment E=1.9e-50

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_2782)

Predicted SEED Role

"diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)" in subsystem Bacterial hemoglobins

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IYU2 at UniProt or InterPro

Protein Sequence (561 amino acids)

>HSERO_RS13970 diguanylate cyclase (Herbaspirillum seropedicae SmR1)
MKIKRFDCSLVTRLVLFGLMLIGISAVLRYHILIGFLEKEQAQVAADQQSIIASYLAQDI
GYRVQERVRYLERLALHLPADRLEDGHAMQAWLREHQELQPLFAQGMFVAAANGQILVDY
PTLNGRRALSLADYPDFKRVLQGATVICPPLLSPATGRPIMAVLTPVRDAHGRVVGILGG
STELTAAGFLDHLQRAQLGPTGSFLLISPEQRMIVASSDEALVYTRLPATGQDLLMDQAL
QGFRGNGVGLAANGVNEIKAFAPVPGTSWLVAATLPLAAALPTVERTRALIARGGLIQAA
MVVLLVVLAYLWFFRPLRRAAALADRMTRGELPLSPLPVDRRDEVGQLTMAFNGLLARLK
LHQAELQHQAHHDVLTGLPNRMMLAERMQAALTHACRERNGVGLLFLDLDGFKPINDTLG
HKAGDQVLQEITRRLRQVARHGDTLARVGGDEFVLLVTDLRLPFEQGAQALAEKCIKTVS
EPICLDQRQYRLGVSVGIAVCDGSCDADSLLQAADQAMYAAKANGRGCYVIAPARPACAN
TALSAPAETAGTTRPADSAHS