Protein Info for HSERO_RS13875 in Herbaspirillum seropedicae SmR1

Annotation: O-antigen polymerase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 429 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 39 to 63 (25 residues), see Phobius details amino acids 75 to 95 (21 residues), see Phobius details amino acids 102 to 122 (21 residues), see Phobius details amino acids 129 to 151 (23 residues), see Phobius details amino acids 171 to 188 (18 residues), see Phobius details amino acids 199 to 233 (35 residues), see Phobius details amino acids 239 to 260 (22 residues), see Phobius details amino acids 279 to 298 (20 residues), see Phobius details amino acids 306 to 322 (17 residues), see Phobius details amino acids 342 to 365 (24 residues), see Phobius details amino acids 383 to 422 (40 residues), see Phobius details PF19358: DUF5935" amino acids 1 to 186 (186 residues), 84.4 bits, see alignment E=1e-27 TIGR03097: probable O-glycosylation ligase, exosortase A-associated" amino acids 2 to 424 (423 residues), 402.4 bits, see alignment E=1.1e-124 PF04932: Wzy_C" amino acids 204 to 357 (154 residues), 66.3 bits, see alignment E=2.8e-22

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_2764)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IYS4 at UniProt or InterPro

Protein Sequence (429 amino acids)

>HSERO_RS13875 O-antigen polymerase (Herbaspirillum seropedicae SmR1)
MRDIILLCVLPFLLYATLKRPFIGLGLWIWTAMFYPNAWVYGMAAGIRYNLLISASAILS
YLCSRNKNRFEVGNTGAFVLLFFAWTTVTSVFALAMPDRVWGFWNDFLKTVVLFVLITLV
LTKKEHIEFVLWCLVLSVGFYAGLEGLKFIASGGGHKIEGFATHTLGDRNELSIAFAMML
PLTFYLLAEYGKRSRLLRLGLLGSLLLLVVSIIGTQSRGGFIALTVVGGYLFLKSRRKIL
LLVSVLIAGSLVVGLIPSEWFHRMDTIERVGGDSSFMGRVVAWKLSTILALQHPLLGGGF
KSLEYWPVWTLLSLDFHMLSFFPTGDAVPDTRGAHAAHSIYFQVLGEHGFPGLLLFLCIL
VTAFRKAARVARTATEVGAPEWIASLATALQLSLFAYCVGAAALSFAYFDMTYTLCALIV
VLEKRILPA