Protein Info for HSERO_RS13820 in Herbaspirillum seropedicae SmR1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 504 transmembrane" amino acids 20 to 41 (22 residues), see Phobius details amino acids 50 to 73 (24 residues), see Phobius details amino acids 85 to 108 (24 residues), see Phobius details amino acids 119 to 140 (22 residues), see Phobius details amino acids 150 to 172 (23 residues), see Phobius details amino acids 178 to 198 (21 residues), see Phobius details amino acids 210 to 230 (21 residues), see Phobius details amino acids 247 to 275 (29 residues), see Phobius details amino acids 297 to 319 (23 residues), see Phobius details amino acids 330 to 348 (19 residues), see Phobius details amino acids 360 to 381 (22 residues), see Phobius details amino acids 387 to 404 (18 residues), see Phobius details amino acids 416 to 438 (23 residues), see Phobius details amino acids 443 to 470 (28 residues), see Phobius details PF01943: Polysacc_synt" amino acids 17 to 280 (264 residues), 91.8 bits, see alignment E=8.2e-30 PF13440: Polysacc_synt_3" amino acids 37 to 327 (291 residues), 264 bits, see alignment E=2.5e-82 PF14667: Polysacc_synt_C" amino acids 332 to 468 (137 residues), 31.2 bits, see alignment E=3.3e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_2754)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IYR5 at UniProt or InterPro

Protein Sequence (504 amino acids)

>HSERO_RS13820 hypothetical protein (Herbaspirillum seropedicae SmR1)
VSQTMHNDLRSKTVKAISHVGLGNAVGKLVSLSTTLVLARLLSPAEYGLMEIAMMLIAFI
GFFNEIGLTTAIVQRPQLSQEQVNGCFLIAMGCSVVLFLLTLLAAGPLAGFFRQPQLQPM
ISTLAVGFIMGAAGSVPEAFLRKQMQFKAMAGITILGIVLQSAVSLGLALAGMGVWSLVW
GSLVATATYSGGYFLLSPWRPRGRYGVREAVELVLFGLHVITSRVFWYLYSNADRAIVGR
VLGAASLGIYGMAFSLATLPSSQITSLVINVAAPLFAKLQHEPARLNAVLVNMTRGIAYV
VYPALMGMLACSHELILVVLGPQWEQCQVPFSALCLMGLVKSVDPLLSQVLTAIGQVKRL
VAYTALCAVTMSLAFAVGAWADGLRGVSAAWVLVYPLLSVKLLHDVARLTGLSMRGYYRA
LLPILAGALAMLAVLLGVRAGLYALALPVPLILVLEILSGALAYLAWIVYVDRHAVGEIG
QILVDLGVPAARLQRWPFVRKGQP