Protein Info for HSERO_RS13625 in Herbaspirillum seropedicae SmR1

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 423 transmembrane" amino acids 28 to 51 (24 residues), see Phobius details amino acids 61 to 82 (22 residues), see Phobius details amino acids 91 to 111 (21 residues), see Phobius details amino acids 117 to 134 (18 residues), see Phobius details amino acids 154 to 177 (24 residues), see Phobius details amino acids 183 to 202 (20 residues), see Phobius details amino acids 214 to 232 (19 residues), see Phobius details amino acids 238 to 262 (25 residues), see Phobius details amino acids 271 to 292 (22 residues), see Phobius details amino acids 303 to 321 (19 residues), see Phobius details amino acids 327 to 348 (22 residues), see Phobius details amino acids 385 to 410 (26 residues), see Phobius details PF05977: MFS_3" amino acids 19 to 409 (391 residues), 115.5 bits, see alignment E=2.5e-37 PF07690: MFS_1" amino acids 30 to 370 (341 residues), 95.2 bits, see alignment E=3.9e-31

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_2715)

Predicted SEED Role

"MFS general substrate transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IYM6 at UniProt or InterPro

Protein Sequence (423 amino acids)

>HSERO_RS13625 MFS transporter (Herbaspirillum seropedicae SmR1)
MSSTHADAAADASPEPPPPLRHHTPFKLFWCASVASTIALQMQIVAVGWQVYQLTHSALD
LGIVGLVQFIPSLILVFVVGHVADRFDRRNVARVSALVEALAAATLAAGSLGGWLNREII
FVIVAVIGAGRAFSKPTMSALLPSLMSPRQLPGAVAGSASATQFAIIIGPALGGFLYVAG
PAVVYASSCVLFTLCSLLLWLIRRPAQAGAPAAAAKPTGASLSSVFAGLAFIRSKPAIFG
AISLDMFAVLLGGATALLPVFAHDILHTGAAGLGLLRSAPAAGALAVALWLARRPLGGRV
GRTMFVAVGVFGLATMVFGLSRSFPLSLAALAVLGAADMISVVVRSSFVQLETPDAMRGR
VSAVNSVFIGTSNQLGEFESGLTAAWFGAVPAVLIGGVGTLLIVLLWVRLFPALYRVDRL
TSR