Protein Info for HSERO_RS13205 in Herbaspirillum seropedicae SmR1

Annotation: 2-polyprenyl-6-methoxyphenol hydroxylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 407 transmembrane" amino acids 12 to 29 (18 residues), see Phobius details PF01494: FAD_binding_3" amino acids 13 to 172 (160 residues), 35.1 bits, see alignment E=2.4e-12 amino acids 283 to 326 (44 residues), 24.1 bits, see alignment 5.2e-09 PF00890: FAD_binding_2" amino acids 13 to 46 (34 residues), 25 bits, see alignment 2.7e-09 PF01266: DAO" amino acids 13 to 84 (72 residues), 31.1 bits, see alignment E=4.7e-11 PF13450: NAD_binding_8" amino acids 15 to 50 (36 residues), 22.8 bits, see alignment 2.3e-08

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_2638)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IXN2 at UniProt or InterPro

Protein Sequence (407 amino acids)

>HSERO_RS13205 2-polyprenyl-6-methoxyphenol hydroxylase (Herbaspirillum seropedicae SmR1)
MQTLEEQSRQGFVIICGAGVAGLAAAWWMQRAGWRVLVVEQAEELRDGGHMMGLSGPGLA
TVRRMDLVARLGERAYPDMGQHIYRDRRGREILRINYREALAGIEWLTLRRGVLVQELRA
ALPTRDIAWRFGVTVQEALNQASSVRVSLSDGSCHEADLLIAADGVHSSLRRRHFAADAN
CLHPLGYRYASYEVQDHLLLGQDFLSYAEPGIQTEYYGLCDGRLAALHVWRSREAGFVPP
AQRHSLLRTCTARSFTGVRATLEAVENPQEIVIDDLALVELPSWRQGRILLLGDAAHSLS
LISGQGAGVALASASILAEELERAAAGGVAPSSSALESALARHDQRLRPTILRLQHRSRK
LAPMYVPSSRVGFALRNLVLRTMPDVLLKKYFASGLKSEAQALAALA