Protein Info for HSERO_RS13195 in Herbaspirillum seropedicae SmR1

Annotation: ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1145 transmembrane" amino acids 45 to 69 (25 residues), see Phobius details amino acids 75 to 97 (23 residues), see Phobius details amino acids 111 to 135 (25 residues), see Phobius details amino acids 150 to 170 (21 residues), see Phobius details amino acids 182 to 198 (17 residues), see Phobius details amino acids 218 to 239 (22 residues), see Phobius details amino acids 259 to 289 (31 residues), see Phobius details amino acids 309 to 329 (21 residues), see Phobius details amino acids 361 to 381 (21 residues), see Phobius details amino acids 387 to 407 (21 residues), see Phobius details amino acids 428 to 450 (23 residues), see Phobius details amino acids 457 to 478 (22 residues), see Phobius details amino acids 578 to 600 (23 residues), see Phobius details amino acids 620 to 641 (22 residues), see Phobius details PF00512: HisKA" amino acids 687 to 753 (67 residues), 65.6 bits, see alignment 5e-22 PF02518: HATPase_c" amino acids 801 to 909 (109 residues), 86.8 bits, see alignment E=2.2e-28 PF00072: Response_reg" amino acids 935 to 1045 (111 residues), 73.8 bits, see alignment E=1.8e-24

Best Hits

KEGG orthology group: None (inferred from 56% identity to bja:bll0966)

Predicted SEED Role

"Two-component hybrid sensor and regulator"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IXN0 at UniProt or InterPro

Protein Sequence (1145 amino acids)

>HSERO_RS13195 ATPase (Herbaspirillum seropedicae SmR1)
VTHPATQRIVKVRRDYNTWVANETLEDYALRYTPLSFRRWSEFRLANTALGATSFLALEA
ISGAITLSYGFTNAFWAIACVVLLFFLTGLPICYYAARYGVDMDLLTRGAGFGYIGSTIT
SLIYASFTFIFFALEAAIMAQAIEIYFGLPLVYGYVLCSIIIIPMVAYGITLINRLQMWT
QPLWLVLLVLPYVCVLYKEPDALSNLMSFAGRAEEGSSFNLTLFGAAATVAFSLIAQVGE
QVDFLRFLPQKTPANRGRWWSALLLAGPGWILLGGAKMLGGALLAFLAIQHEVPMARAVE
PTQMYLVGYQYVFGNPALALGAVVLFVVVSQIKINVTNAYAGSLAWSNFFARLTHSHPGR
VVWLVFNVLIAVLLMELGVFNALEHVLALYSLVAISWIGAVVADLVINKPLRLSPAHIEF
KRAHLYDVNPVGVGAMAIATLLSTLAMSGVLGKTVAAMAPFIALGTALASAPLIALATGS
RYYIARRDTLAEQNYRPVTPGQAQPVLACAICGNAFETPDMAHCPAYQGAICSLCCSLDA
RCKDRCKTPRARLPNQILHTLRQLIPARFAVKLNTRIGHYLSVFGLLAGGLAVVLWMLYF
QQMADLSGSGLDAPASLRSVFIKLFCLLLVVVGVGAWWLVLTNESRAVAQEESERQTNLL
LQEIEAHKQTDAELQRAKEAAESANLAKSRFVAGMSHELRTPLNSILGYAQILHVDATIP
PARKDAIGVIRRSGEHLLSLIDGLLDIAKIEAGKMRLASDELALEAFLEQIVGMFAPQAE
QKGLHFRFDKSGRLPQIVHADQKRLRQILINLLGNAVKFTDHGGVTLRLRYAREIAYFDV
IDTGIGIADDDRERIFLPFERSSAANLREDIGTGLGLAISRMLVHIMGGELSVQSQVGQG
SSFHLKIYLPEVHVPRPRIKLEDQMSGYAGPSRHILVVDDQASQRRLLKDMLMPLGFTVS
EADSGLACMETLGHALPDLVLLDIAMPQMDGWSVARAIRARGLAQLPILLVSANAFENLH
ERNEPPLVNDFVVKPVSYHELLGKIRQHLQLDWVAAADAPTPAAPPPAPQALMLVPTQEK
LATLLELGSIGYAKEIVRQLDALERQDPAYLPFTTELRQLVRQFRLNEYVTRIKELIRHD
LNDVR