Protein Info for HSERO_RS13180 in Herbaspirillum seropedicae SmR1

Annotation: urea ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 401 transmembrane" amino acids 14 to 33 (20 residues), see Phobius details amino acids 45 to 67 (23 residues), see Phobius details amino acids 123 to 146 (24 residues), see Phobius details amino acids 153 to 172 (20 residues), see Phobius details amino acids 201 to 222 (22 residues), see Phobius details amino acids 243 to 269 (27 residues), see Phobius details amino acids 275 to 296 (22 residues), see Phobius details amino acids 299 to 319 (21 residues), see Phobius details amino acids 325 to 349 (25 residues), see Phobius details TIGR03408: urea ABC transporter, permease protein UrtC" amino acids 30 to 348 (319 residues), 440.4 bits, see alignment E=2.6e-136 PF02653: BPD_transp_2" amino acids 38 to 338 (301 residues), 105.3 bits, see alignment E=1.6e-34

Best Hits

KEGG orthology group: K01998, branched-chain amino acid transport system permease protein (inferred from 100% identity to hse:Hsero_2633)

Predicted SEED Role

"Urea ABC transporter, permease protein UrtC" in subsystem Urea decomposition

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IXM7 at UniProt or InterPro

Protein Sequence (401 amino acids)

>HSERO_RS13180 urea ABC transporter permease (Herbaspirillum seropedicae SmR1)
MNAAYEKLLGGRSGALGLLVMAALLLVVFPLTLDMFRLNLVGKYLSYAFVAVGLVLCWGY
GGILSLGQGVFFGLGGYCMAMFLKLEASDPISTKIQSTPGIPDFMDWNQITALPAMWEPF
HSFAFTIFAVLAVPTVLAMLIGMAMFKRRVGDVYFSIVTQAIAAILSILIIGQQGLTGGV
NGITDLKTLMGWDIRTDHAKLVLYFVNAGLLFGCILFGRYVLGSKLGRLLVAMRDKEERV
RFSGYDVASFKVFVFCAAAMFSAIGGAMFTLQVGFMSPSFVGIVPSIEMVIFAAVGGRMS
LLGAVYGTLLVNFGKTYFSETFPELWLFLMGGLFIAVVMYFPNGLAGLWQTQGKRLMGKL
RGEPNAKAAVAAEPLKTTPRPSTPDTKRDGIEPGATLEASK