Protein Info for HSERO_RS13140 in Herbaspirillum seropedicae SmR1

Annotation: poly(3-hydroxyalkanoate) synthetase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 832 transmembrane" amino acids 621 to 639 (19 residues), see Phobius details PF11339: DUF3141" amino acids 40 to 594 (555 residues), 750.8 bits, see alignment E=5.4e-230

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_2625)

Predicted SEED Role

"Poly(3-hydroxyalkanoate) synthetase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IXL9 at UniProt or InterPro

Protein Sequence (832 amino acids)

>HSERO_RS13140 poly(3-hydroxyalkanoate) synthetase (Herbaspirillum seropedicae SmR1)
MINRKKPVSAAPNDGHAHPDDDQPVAASASWGDVPAYLQDCLQRSFLFLDTLLDRGNDYL
EHLEQGTPPLLKFAHEVVLDGHDLPQACNYALLRLQPPAGLPVNPQARPVVVVDPRAGHG
PGIGGFKFDSEVGMAMKAGHTVYFVTFRPEPEDGQTLVTVMDAEARFLEEVIRRHPQCSA
KPVVIGNCQAGWAMMTLDAVRPELFGPLMMVGAPASYWAGSSTLNPMRYSGANLGGTWLA
SLAADLGADRFDGAYLVENFEKLNPANTFWNKYYNLWAGVDQEAARFLEFERWWGGFFRM
TGAEIEAITENLFVGNKLARGELQVRGKPVNLREISAPIVVFASWGDNITPPPQALNWII
DTWGDERAIAAAGRTIIYVLHESVGHLGIFVGGSVALKEHDQLVSSLDVIESLPPGLYEM
KLERKDGRPTQRWDVLEPGDYTVHYEHRTMEDLRKLNPEGREEEAIFSTISQWSQMNAQF
YKTWVRPWVRMTATRESANALMRMNPLRMQRQLFSDAHPAAAFIRQQAAQARAQRVQLDP
QHPLKQYEARMAQKITDELNAWRDQRDARTVRMTRQMFGPNGLGAWLPPREPDAELAQRW
AQQELGRYRETVIGQIAEGGFAEAVCRIVIAGMISIGVFERRSLRLARLLAQLPNMHASV
SAQTNWVQLLKEQARITAVAPVEALNALGQMLPDAASRERALALSAAVMMIEPTLANPRS
EIIELLIGTLDVNPDKVIALARKLTSAIGAGSDEVTVPAGELEAAPVKRPRASSPRRTEA
KPAPTPARTQRKAAAPAQPSKAAKSVTSAKSLKPAKPSSATTTKRSARSRSN