Protein Info for HSERO_RS13030 in Herbaspirillum seropedicae SmR1

Annotation: folate-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 360 PF01571: GCV_T" amino acids 56 to 165 (110 residues), 44.7 bits, see alignment E=5.1e-16 TIGR03317: folate-binding protein YgfZ" amino acids 222 to 285 (64 residues), 86.5 bits, see alignment E=4.6e-29

Best Hits

KEGG orthology group: K06980, (no description) (inferred from 100% identity to hse:Hsero_2603)

Predicted SEED Role

"Folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IXJ7 at UniProt or InterPro

Protein Sequence (360 amino acids)

>HSERO_RS13030 folate-binding protein (Herbaspirillum seropedicae SmR1)
MTEMTSSPSAWRDFLAQQGAQFEADSAEPVDHADVIGFAPTAAAPQSLESFMAPLTSLGL
IAVTGEDAASFLHGQLTNDVQHLDTGSARLAGYCSPKGRLLATFLMWRDDQASWLQLPRS
LQPAIQKRLQMFVMRAKAKLADASTERGVLGLAGPATANALAEWFPVLPAAPYDKIDNSH
GTLIRLADAAGSPRYQWIAAIDTLTAAWPRLAQHLTPTASLAWRLSEIRAGVPGIVAATQ
EQFVPQMINFELIGGVNFKKGCYPGQEIVARSQYLGKLKRRTMLATIDSAAARAGQEVFA
AADPGQPCGMVVNAEALDDGHALALVEMKLAAAEDAVHLGAADGPALHFHALPYELADPQ