Protein Info for HSERO_RS12855 in Herbaspirillum seropedicae SmR1

Annotation: histidine kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 487 PF00072: Response_reg" amino acids 7 to 109 (103 residues), 58.2 bits, see alignment E=1.8e-19 TIGR00229: PAS domain S-box protein" amino acids 138 to 262 (125 residues), 45.8 bits, see alignment E=3.1e-16 PF08448: PAS_4" amino acids 149 to 257 (109 residues), 47.8 bits, see alignment E=3.1e-16 PF07730: HisKA_3" amino acids 283 to 346 (64 residues), 42.9 bits, see alignment E=1.2e-14 PF02518: HATPase_c" amino acids 387 to 481 (95 residues), 62.6 bits, see alignment E=9e-21

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_2571)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IWQ0 at UniProt or InterPro

Protein Sequence (487 amino acids)

>HSERO_RS12855 histidine kinase (Herbaspirillum seropedicae SmR1)
MSIPLRVLFVEDMEEDAFLMVRELKRGGFEPAWERVDDEQALLAALQAQPWDIVISDYSM
PMFSGVEALKLVKAHNDQTPFIIVSGVIGEQTAVEVMKAGAQDYFLKSAIGRLPHAVDRE
LRDAQARRKQRASAQALREMQARFNAFMNAAPMPTWIKDAQLRYSYVNPAQSAFYGMTPG
DMDGLTDLELMSSGAAAASQENDRKVLEQKCELHTQETVFDHNHNARILDVVRFPISGEG
KGDMVAGLAIDVTEREQSRRDLELAIQRQQLLSSRVIEVQERERQHLARGLHDDVGQSLT
ALKINLETIKKMGSLEGPSLQNGIDIVTAVLAQVRSLSLDLRPPQLDNLGLIAALRSYVE
QKSKLANVNGWFESSGHDEQLHHDIENTAFRIVQEAVTNILRHARCQNIWVKIDRQHDQV
YLSIRDDGRGFDIERARSNAISGTSFGLLNMEERAVLVGGSMEITSAPGAGTEIVMHLPV
APIVRRM