Protein Info for HSERO_RS12590 in Herbaspirillum seropedicae SmR1

Annotation: ethanolamin permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 460 transmembrane" amino acids 18 to 37 (20 residues), see Phobius details amino acids 46 to 67 (22 residues), see Phobius details amino acids 93 to 118 (26 residues), see Phobius details amino acids 130 to 150 (21 residues), see Phobius details amino acids 156 to 179 (24 residues), see Phobius details amino acids 194 to 220 (27 residues), see Phobius details amino acids 233 to 254 (22 residues), see Phobius details amino acids 283 to 306 (24 residues), see Phobius details amino acids 333 to 350 (18 residues), see Phobius details amino acids 361 to 382 (22 residues), see Phobius details amino acids 402 to 422 (21 residues), see Phobius details amino acids 428 to 445 (18 residues), see Phobius details TIGR00908: ethanolamine permease" amino acids 10 to 454 (445 residues), 641.7 bits, see alignment E=3.2e-197 PF13520: AA_permease_2" amino acids 16 to 422 (407 residues), 138.7 bits, see alignment E=2.7e-44 PF00324: AA_permease" amino acids 24 to 428 (405 residues), 120.1 bits, see alignment E=1.1e-38

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_2519)

Predicted SEED Role

"Ethanolamine permease" in subsystem Ethanolamine utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IWJ8 at UniProt or InterPro

Protein Sequence (460 amino acids)

>HSERO_RS12590 ethanolamin permease (Herbaspirillum seropedicae SmR1)
MNASSSGQGHTLKPVLSTLQLWAIAVGLVISGEYFGWSYGWASAGTLGFTVTALFIAAMY
ATFIFSFTELTTSIPHAGGPFAYSKRAFGPVGGYLAGAATLIEFVFAPPAIALAIGAYLN
VQFPNIDPKLAALGAYLVFMTLNIVGVQIAATFELFVTLLAIFELLVFMGVVAPGFSLAN
FTKGGWSGSDGFSLAAVPGMFAAIPFAIWFFLAIEGVAMAAEEAKDPRRSIPIAYITGIL
TLVVLAIGVMLFAGGAGDWTKLANINDPLPQAMKLIVGDNSNWLHMLVWLGLFGLVASFH
GIILGYSRQIFALAREGYLPAYFARVHPRFKTPHRAILAGGVVGIAAIYSDELIKIGGQT
LTANIVTMSVFGAILMYILSMLSLFRLRRAEAGLERPFRAPLYPYFPAFALFGALVCMAT
MIYYNPLIFGIFVALLALGYAWFLATARQRAEGAAAVAEF