Protein Info for HSERO_RS12300 in Herbaspirillum seropedicae SmR1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 285 transmembrane" amino acids 30 to 52 (23 residues), see Phobius details amino acids 243 to 264 (22 residues), see Phobius details PF02104: SURF1" amino acids 39 to 254 (216 residues), 178.5 bits, see alignment E=1.1e-56

Best Hits

KEGG orthology group: K14998, surfeit locus 1 family protein (inferred from 100% identity to hse:Hsero_2460)

Predicted SEED Role

"Cytochrome oxidase biogenesis protein Surf1, facilitates heme A insertion" in subsystem Biogenesis of cytochrome c oxidases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IWD9 at UniProt or InterPro

Protein Sequence (285 amino acids)

>HSERO_RS12300 hypothetical protein (Herbaspirillum seropedicae SmR1)
MSQTPINGVKQGKESGAAQAVPVSRTKASLLLLTLLAGFFFLVFAALGSWQVYRLQWKLD
LIAKVDARVHAAPVAPPGPALWPQVSAQRDEYKRVVLTGRYLYSKTVAVQASTDLGSGAW
LLTPLQLADGEVVLVNRGFVGVSPLKLAEASLADAPAGQNAEVTGLLRMSEPKGGFLRSN
DAAQSRWYSRDVQAIAQAKGLTSVAPYFVDADKASAEANAAVAPDAQKPVGGLTVIAFHN
SHLIYALTWYALALMSLGAGYWLIRDERRWRERIRQAQSQSPSQG