Protein Info for HSERO_RS12160 in Herbaspirillum seropedicae SmR1

Annotation: Fe2+-dicitrate sensor membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 342 transmembrane" amino acids 97 to 115 (19 residues), see Phobius details PF16220: DUF4880" amino acids 14 to 57 (44 residues), 33.8 bits, see alignment 2.4e-12 PF04773: FecR" amino acids 129 to 223 (95 residues), 75.1 bits, see alignment E=4.9e-25

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_2432)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IVJ2 at UniProt or InterPro

Protein Sequence (342 amino acids)

>HSERO_RS12160 Fe2+-dicitrate sensor membrane protein (Herbaspirillum seropedicae SmR1)
MPSNPIPLQDPVLDQAIAWLVKLRAFPGDAAVAPELQAGIAAWRAADPRHEQVWSELMAS
EEQFQRLVALPVPASQWHGPLKRLNQRRQHSQSRRRWMGNAMLGLGAIALGAVAARQAGL
FEALDGASYATRTGDQRQLRLGDGTALALNTSSSVQLRFDDTRRLLLLRQGEIFIDTGAD
AQWPHHRPFWVQTAHARLQALGTRFDVRQHGDGTQLTVLEGRVAVHVAGVDPLVAQPGEI
VDIHPDGRLVRRAARASAMDPTAWLEQSLVVRQMRLADVVAQLARYRSGWLQCDPAVADW
QVSGVFQLQDTDVALEALAQALPLTIERRTRFWVRVAAAGKR