Protein Info for HSERO_RS12110 in Herbaspirillum seropedicae SmR1

Annotation: sugar ABC transporter substrate-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 331 signal peptide" amino acids 1 to 15 (15 residues), see Phobius details PF13407: Peripla_BP_4" amino acids 20 to 267 (248 residues), 146.9 bits, see alignment E=8.3e-47 PF00532: Peripla_BP_1" amino acids 27 to 225 (199 residues), 36.3 bits, see alignment E=4.4e-13

Best Hits

KEGG orthology group: K02058, simple sugar transport system substrate-binding protein (inferred from 100% identity to hse:Hsero_2424)

Predicted SEED Role

"Inositol transport system sugar-binding protein" in subsystem Inositol catabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IVI4 at UniProt or InterPro

Protein Sequence (331 amino acids)

>HSERO_RS12110 sugar ABC transporter substrate-binding protein (Herbaspirillum seropedicae SmR1)
MALLAAATPSPSVAANERFVLISHAPDSDSWWNTIKNAIKQAGEDFDVSVDYRNPSNGDL
ADMARLVEQAAARNYNGVVVSIADFSVLKKPIEMVVAKNIPVITINSGTQQQSEQLGALM
HVGQPEYDAGYGAGQKAKAAGIKSFLCVNHYATNPSSFERCRGFAEAIGADYKKSTLDTG
IDPNAVESKVSAYLRNNPGTQAVLALGPDSAVPSLRALQKMGLKSKIWFATFDLSEEIAN
GIKDGSVQFAIDQQPYLQGYIPVAILALSRQLKTNDVAVLQDKLKGNAKFQARLAEYGLA
PIYGPRHISSGPGYITRDNLDKVLKYAGQYR