Protein Info for HSERO_RS11630 in Herbaspirillum seropedicae SmR1

Annotation: methionine ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 363 PF00005: ABC_tran" amino acids 32 to 180 (149 residues), 128.4 bits, see alignment E=6.1e-41 PF09383: NIL" amino acids 278 to 331 (54 residues), 30.2 bits, see alignment 6.4e-11

Best Hits

Swiss-Prot: 64% identical to METN2_PSEF5: Methionine import ATP-binding protein MetN 2 (metN2) from Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5)

KEGG orthology group: K02071, D-methionine transport system ATP-binding protein (inferred from 100% identity to hse:Hsero_2323)

Predicted SEED Role

"Methionine ABC transporter ATP-binding protein" in subsystem Methionine Biosynthesis or Methionine Degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IV83 at UniProt or InterPro

Protein Sequence (363 amino acids)

>HSERO_RS11630 methionine ABC transporter ATP-binding protein (Herbaspirillum seropedicae SmR1)
LATPARGGPHGKVALRGVGKTYVSAAGPVQALQDIDLEIAPGSIFGIIGRSGAGKSSLLR
TINRLERPTSGRVEVDDVDLATLDETQLVALRRRIGMIFQHFNLLAAKTVFDNIALPLRV
AGVPRAQITQRVHELLALVGLQDKADSYPRRLSGGQKQRVGIARALASGPEILLCDEATS
ALDPETTQSILQLLRDINRKLGITIILITHEMSVIREIADRVLVLEQGRVAELGEVWQVF
GKPQHAATRALLAPLQHGLPQELQQALQPQAPAGRHERVLQLEFHGGDGLQPDLQRIAAV
LGGRVRVLQAGVDHIQGHTHGQLVLAVADAPASHDWLALTQGAQAIAHHIKELGYVADPV
HSH