Protein Info for HSERO_RS11305 in Herbaspirillum seropedicae SmR1

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 transmembrane" amino acids 21 to 45 (25 residues), see Phobius details amino acids 65 to 88 (24 residues), see Phobius details amino acids 100 to 120 (21 residues), see Phobius details amino acids 127 to 146 (20 residues), see Phobius details amino acids 199 to 218 (20 residues), see Phobius details amino acids 224 to 244 (21 residues), see Phobius details PF06912: DUF1275" amino acids 24 to 240 (217 residues), 142.7 bits, see alignment E=6.2e-46

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_2263)

Predicted SEED Role

"Probable transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IUA0 at UniProt or InterPro

Protein Sequence (250 amino acids)

>HSERO_RS11305 membrane protein (Herbaspirillum seropedicae SmR1)
MPIDYLRRLTSPARTDLSNRHLGRSLAFIAGAVNAGGFLAVGQYTSHMSGIVSSLADNLV
LGETLLLVGGASALLSFLAGAACSTVMINWARRRSLHSEYAMPLMLEAMLLLCFGILGSN
LENHRVLFVPVTVALLCFVMGLQNAMISKISRSEIRTTHVTGLVTDIGIEIGKICYWSAA
PRQPGEHGEDPVPAARRKFMLLGSLLLMFFLGGVAGALGFKLVGFLATMPLAAGLFLLAL
VPMMDDLARS