Protein Info for HSERO_RS11115 in Herbaspirillum seropedicae SmR1

Annotation: citrate transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 433 signal peptide" amino acids 1 to 16 (16 residues), see Phobius details transmembrane" amino acids 25 to 43 (19 residues), see Phobius details amino acids 53 to 73 (21 residues), see Phobius details amino acids 102 to 126 (25 residues), see Phobius details amino acids 138 to 156 (19 residues), see Phobius details amino acids 176 to 195 (20 residues), see Phobius details amino acids 231 to 247 (17 residues), see Phobius details amino acids 253 to 271 (19 residues), see Phobius details amino acids 284 to 303 (20 residues), see Phobius details amino acids 323 to 342 (20 residues), see Phobius details amino acids 348 to 370 (23 residues), see Phobius details amino acids 382 to 402 (21 residues), see Phobius details amino acids 410 to 431 (22 residues), see Phobius details TIGR00784: citrate transporter" amino acids 1 to 430 (430 residues), 396.9 bits, see alignment E=7.2e-123 PF03600: CitMHS" amino acids 16 to 373 (358 residues), 95.5 bits, see alignment E=1.8e-31

Best Hits

KEGG orthology group: K03300, citrate-Mg2+:H+ or citrate-Ca2+:H+ symporter, CitMHS family (inferred from 100% identity to hse:Hsero_2226)

Predicted SEED Role

"Uncharacterized transporter, similarity to citrate transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IU63 at UniProt or InterPro

Protein Sequence (433 amino acids)

>HSERO_RS11115 citrate transporter (Herbaspirillum seropedicae SmR1)
MLALLGFVTIVSLFTAILTKKMSPLVALIAIPIVAALLGGFGLQTSKFIVQGVTAIAPVA
GMFVFAILFFGIVTDAGMLDPIISRILKTVGSRPTRIVPGTALLALLIHLDGSGAVTFLI
TIPAMLPLYTRLGIDKRILACVTSMAAGVNFLPWTGPMIRASAALHIPVSDIFTPLIPVQ
LVGLTFVFIASYLLGLKEERRLGLGKGATVDFVQQHELSEAQLKIRRPQNFWANIVLTIF
VLGVMISGKVDPVVMFMIGVVLALMINYRDVTMQRERIDAHAKAALLMASILFAAGVFTG
IMTKSGMLSAMAKTAVGLVPPEMASHIPVVLGVLSMPLSLLFDPDSFYFGVLPVIAEVSH
MLGVPTIQVAQAALLGQMTTGFPVSPLTPATFLVCGLAGIELADHQKYTIPFLFGASLVM
TIACVVLGLFPLF