Protein Info for HSERO_RS10845 in Herbaspirillum seropedicae SmR1

Annotation: cyanophycin synthetase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 732 TIGR02068: cyanophycin synthetase" amino acids 6 to 721 (716 residues), 993.2 bits, see alignment E=5.3e-303 PF18921: Cyanophycin_syn" amino acids 26 to 138 (113 residues), 123.7 bits, see alignment E=1.1e-39 PF02786: CPSase_L_D2" amino acids 217 to 303 (87 residues), 32.7 bits, see alignment E=1.7e-11 PF13549: ATP-grasp_5" amino acids 220 to 288 (69 residues), 32.1 bits, see alignment E=2.3e-11 PF08245: Mur_ligase_M" amino acids 485 to 698 (214 residues), 50.4 bits, see alignment E=8.3e-17

Best Hits

KEGG orthology group: K03802, cyanophycin synthetase [EC: 6.-.-.-] (inferred from 100% identity to hse:Hsero_2171)

Predicted SEED Role

"Cyanophycin synthase (EC 6.3.2.29)(EC 6.3.2.30)" in subsystem Cyanophycin Metabolism (EC 6.3.2.29, EC 6.3.2.30)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 6.-.-.-, 6.3.2.29, 6.3.2.30

Use Curated BLAST to search for 6.-.-.- or 6.3.2.29 or 6.3.2.30

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IU08 at UniProt or InterPro

Protein Sequence (732 amino acids)

>HSERO_RS10845 cyanophycin synthetase (Herbaspirillum seropedicae SmR1)
MKNIEFLRFLNLKGPNIWTYRSALEVWIDIGELEDFPSNTIPGFPDRLTTWLPTLIEHRC
SYEERGGFVRRLHEGTWPGHILEHVTLELQNLAGLPGGFGKARETNVRGVYKVVVRARHE
TVTRAALYAARDLVMAAIEDRPYDLDATLSKLRRMVDRLCLGPSTACIVDAADERRIPTI
RLSEGNLVQLGHGCKSRRIWTAESDQTSAIAEGISRDKDLTKSLLETCGVPVPEGRLVES
PEDAWEAAQDIGLPVVVKPCDANHGRGVFIDLNTREEIETAYKVALEEGSGVLVERFVPG
LEHRLLIVGGKLAAAARGEPIFIVGDGKSTVQDLLDELNRDPRRGLLEEHLLDPVLLERE
PAAVLELQRQNLTTESVPAAGRRILLLRNGNVSSDITDLVHPSVAAAASLAARIVGLDIA
GVDIVAEDISRPLQDQGGAIVEVNAGPGLLMHLKPSDGKPRPVGEAIIDNLFGPEENGRI
PIVGVTGTHGKTTIARLIARIVHLSGKHVGLACGEGLYFGERQIERGNRANWDAAHRVLL
NRAVEAAVFENGSAAILAEGLAYDRCLVGVVANIDPNDSLPEFYIENAEQIATKVKRTQV
DLVLPDGAAVLNADDPLVADMAQLCDGEVIFFSTDPASELVASHLKEGGRAVFLRGGDLI
QAEGERQCKVSSVDAIPLTENGAVAYQVENVLAAVGAAWALGISPEVIRAGIELFGTERA
EEQGLKFKNQAA