Protein Info for HSERO_RS10745 in Herbaspirillum seropedicae SmR1

Annotation: DNA repair protein RadA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 461 TIGR00416: DNA repair protein RadA" amino acids 1 to 450 (450 residues), 640 bits, see alignment E=1e-196 PF18073: Rubredoxin_2" amino acids 8 to 35 (28 residues), 42.8 bits, see alignment (E = 9.9e-15) PF03796: DnaB_C" amino acids 75 to 216 (142 residues), 31.6 bits, see alignment E=3.3e-11 PF06745: ATPase" amino acids 75 to 158 (84 residues), 42.7 bits, see alignment E=1.3e-14 PF13481: AAA_25" amino acids 79 to 221 (143 residues), 57.6 bits, see alignment E=4.1e-19 PF05362: Lon_C" amino acids 360 to 453 (94 residues), 25.5 bits, see alignment E=2.7e-09

Best Hits

Swiss-Prot: 62% identical to RADA_PSEAE: DNA repair protein RadA (radA) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

KEGG orthology group: K04485, DNA repair protein RadA/Sms (inferred from 100% identity to hse:Hsero_2151)

Predicted SEED Role

"DNA repair protein RadA" in subsystem DNA repair, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IT91 at UniProt or InterPro

Protein Sequence (461 amino acids)

>HSERO_RS10745 DNA repair protein RadA (Herbaspirillum seropedicae SmR1)
MAKVKTNYTCTECGGVSNKWAGQCPACGQWNTLVETLVEPAGGNRYSNSPQSLAQTAPVL
SLADIEAIDVPRFGTGIEEFDRVLGGGLVPGGVALIGGDPGIGKSTLLLQALANISRLKK
VLYVSGEESGAQIALRAKRLAVDARELQLQAEIQLEKILATLAEHKPEVAVIDSIQTLYS
DALTSAPGSVAQVRECAAQLTRVAKTSGITIIMVGHVTKEGALAGPRVLEHIVDTVLYFE
GDTHSSFRLVRAFKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHENQVPGSCVMVTQ
EGTRPLLVEIQALVDSSHVPNARRLSVGLEQNRLAMLLAVLHRHAGVAAFDQDVFINAVG
GVKITEPAADLAVLLAINSSMRNKPLPRGLVVFGEVGLAGEIRPAPRGQERLREAAKLGF
SIAVIPKANAPKQAIEGLKVIAVERIDDALQKAREIDDHAS