Protein Info for HSERO_RS10445 in Herbaspirillum seropedicae SmR1

Annotation: glycosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 572 transmembrane" amino acids 9 to 31 (23 residues), see Phobius details amino acids 87 to 105 (19 residues), see Phobius details amino acids 114 to 133 (20 residues), see Phobius details amino acids 140 to 155 (16 residues), see Phobius details amino acids 168 to 201 (34 residues), see Phobius details amino acids 213 to 233 (21 residues), see Phobius details amino acids 262 to 284 (23 residues), see Phobius details amino acids 309 to 325 (17 residues), see Phobius details amino acids 331 to 348 (18 residues), see Phobius details amino acids 355 to 375 (21 residues), see Phobius details amino acids 395 to 415 (21 residues), see Phobius details amino acids 422 to 440 (19 residues), see Phobius details PF02366: PMT" amino acids 16 to 238 (223 residues), 46.4 bits, see alignment E=5.8e-16 PF13231: PMT_2" amino acids 65 to 228 (164 residues), 69.9 bits, see alignment E=4.8e-23 PF18583: Arnt_C" amino acids 454 to 559 (106 residues), 131.9 bits, see alignment E=9.8e-43

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_2090)

Predicted SEED Role

"Polymyxin resistance protein ArnT, undecaprenyl phosphate-alpha-L-Ara4N transferase; Melittin resistance protein PqaB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IT31 at UniProt or InterPro

Protein Sequence (572 amino acids)

>HSERO_RS10445 glycosyltransferase (Herbaspirillum seropedicae SmR1)
MRELYKSKAFVWTLLILFLLVWFWMLGARVLVPTDEGRYAEMAREMVATQDWITTRLNGI
KYFEKPPLQTWMNAITFELFGLGEWQARLWTGLCGLLGIGLAAYTGKRVFSARVGYYAAL
VLASSFFWAGMGHINTLDMGLSGMMTIALCALLMAQRDGASREGQRNWMLLCWAGMALAV
LSKGLIGIVLPGAVLVLYTLFARDWAIWKRLHLVKGLLLFFAICTPWFVAVSLRNPEFPQ
FFFIHEHFQRFTTKIHSRTGPWYYFIPILLLGIIPWLGVFFQSLWKGTREQRDTAGYNSL
NGGRFQPKRLLLVWAVFIFVFFSISDSKLPSYVLPIFPALALLIACYLEEADHKALAWAG
SLVALPSAVALAFIPRVPELAKDAYSLPLVQAHMPYLYAGALIFFIGGIAAIRLARQNKD
GAVTALAATAFLAGQLLILGHEPQGRYSAGVDYVPALQAELKPETPIYLVGRYEQSLPFY
LRRTMTLVQHADEMAFGLKQEPQLWLPTVDAFVAQWVADHAAGKKDIAIINPTIYQQLLE
RKLPMRLIGQDPRRVIVANDPAPDAAEKKAAK