Protein Info for HSERO_RS10330 in Herbaspirillum seropedicae SmR1

Annotation: flagellar hook-length control protein FliK

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 394 PF02120: Flg_hook" amino acids 315 to 392 (78 residues), 51.3 bits, see alignment E=4.2e-18

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_2064)

Predicted SEED Role

"FIG00726091: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IT05 at UniProt or InterPro

Protein Sequence (394 amino acids)

>HSERO_RS10330 flagellar hook-length control protein FliK (Herbaspirillum seropedicae SmR1)
MLPRADIASAVHPVNAVEPATAVVSVADTRQEAFSRLAQIAVGQQMSGRILSNFSDGTFL
VRIANTAARMVLPNNAKVGDALVLTLVSKDPRPTFSVNEGSIRPDEESASVALSNAGRAM
QKDLKSLQFVTRDDAGAGQIAQNEDIAADAQAKGARPGQTGAPASTTTTLSNAARLIDSL
LHASQQGDMADHVSAPAPLLPRAGLPPEQMAGALKDAIAYSGVFYESHVSAWAAGQRPAE
ELLREPQAQVAAKHGGEINLLSQNDPAQNQLGQIINLQLNALEQQRVLWHGEVWPGQKMD
WEISQEHGQQESNAQADDEAPPSWHSVVRFDFAHLGGVSASIRLIGQQIHVQVKADNEST
AAALRGNSSLFADAMAAAGTSLDSLIVKQSHGET