Protein Info for HSERO_RS10320 in Herbaspirillum seropedicae SmR1

Annotation: flagellar brake protein YcgR

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 251 PF07317: PilZN" amino acids 13 to 119 (107 residues), 103.8 bits, see alignment E=4.7e-34 PF07238: PilZ" amino acids 121 to 237 (117 residues), 39.5 bits, see alignment E=6.1e-14

Best Hits

Swiss-Prot: 47% identical to YCGR_JANMA: Flagellar brake protein YcgR (ycgR) from Janthinobacterium sp. (strain Marseille)

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_2062)

Predicted SEED Role

"FIG00858443: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IT03 at UniProt or InterPro

Protein Sequence (251 amino acids)

>HSERO_RS10320 flagellar brake protein YcgR (Herbaspirillum seropedicae SmR1)
MANQDEIDDDSPYRVRSRREIISLLTSMMEKNQLLSLMIKGGSESVITSILEVDADEDAI
TLDAAPSAMLNESIVSSKQIDFEAIYNSIRITFAVEGARQIEYQGRPALQVDIPESLVRL
QRREFFRIPTPIAKPLRCTFRITQSDGSFVTVVTMLNNISAGGVGITDEKKLLSTTPGVI
YEDCQLELGDNTLVSVKLQVRDCKEFKMTNGKIVNRFGCQFIDIPRTVLAAIQRFITKLE
REQNAKASGMM