Protein Info for HSERO_RS10310 in Herbaspirillum seropedicae SmR1

Annotation: flagellar M-ring protein FliF

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 593 transmembrane" amino acids 47 to 66 (20 residues), see Phobius details amino acids 487 to 506 (20 residues), see Phobius details TIGR00206: flagellar M-ring protein FliF" amino acids 43 to 593 (551 residues), 434.4 bits, see alignment E=4.2e-134 PF01514: YscJ_FliF" amino acids 68 to 242 (175 residues), 237.9 bits, see alignment E=7e-75 PF08345: YscJ_FliF_C" amino acids 277 to 464 (188 residues), 153.2 bits, see alignment E=6.9e-49

Best Hits

KEGG orthology group: K02409, flagellar M-ring protein FliF (inferred from 100% identity to hse:Hsero_2059)

Predicted SEED Role

"Flagellar M-ring protein FliF" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IT00 at UniProt or InterPro

Protein Sequence (593 amino acids)

>HSERO_RS10310 flagellar M-ring protein FliF (Herbaspirillum seropedicae SmR1)
MAVAADGTMTGDTNNTGELGTNEAMPGSQPAQNGMMGYARSPQGKRILLIIAAAATLAVM
AGIWLWSQKVEYRVLFSNFNDRDGGAIVASLQQMNVPYKYSDGGTAILVPENMVHDARLK
LAAQGLPKGGNVGFELMENQKLGISQFLEQVNFQRALEGELARSVGSLASVQTARVHLAL
PKASVFVRDQQKPTASVVLSLYPGRYLDPQQVSAIVHLVASSVPELSPKAVTIVDQNGNL
LSDTTKQAQPNTLDPTQLKYVQDMQQDIVKRVESIIAPIVGNGNVRAEATADVDFSRSEQ
ASEAYKPNQTKDSAAVRSKQSSEANSASNGTSGVPGALSNQPPAPATAPIVNPAVANGAA
NQTGAATPNGALPTPTATGNSRKDETINYEVDKTVRYTQQPMGGVRRLTVAVVVNYKRTM
DNTGKIVMRPLTEAERNQITDLVKEAMGYNKDRGDSLNVVNTQFSTDMEPEVPLWKQPGM
IDLAKEIGKYVLVAAVLLFLYFRVLRPIVWKLSGREERERLAKEKAEAEAAAAAAAVAAG
FDPDDPDAIVNLSGESEVDERAQYKANLETAKQWAKNDPKLVASIIKSWVNNE