Protein Info for HSERO_RS10195 in Herbaspirillum seropedicae SmR1

Annotation: flagellar hook protein FlgE

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 432 TIGR03506: flagellar hook-basal body protein" amino acids 1 to 414 (414 residues), 316.3 bits, see alignment E=1.9e-98 PF00460: Flg_bb_rod" amino acids 6 to 33 (28 residues), 33.2 bits, see alignment (E = 6.1e-12) PF07559: FlaE" amino acids 178 to 312 (135 residues), 87.8 bits, see alignment E=1.4e-28 PF06429: Flg_bbr_C" amino acids 353 to 431 (79 residues), 65.1 bits, see alignment E=7.5e-22

Best Hits

KEGG orthology group: K02390, flagellar hook protein FlgE (inferred from 100% identity to hse:Hsero_2036)

Predicted SEED Role

"Flagellar hook protein FlgE" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8ISX7 at UniProt or InterPro

Protein Sequence (432 amino acids)

>HSERO_RS10195 flagellar hook protein FlgE (Herbaspirillum seropedicae SmR1)
MGFQQGLSGLNGAAKSLDVIGNNVANASTVGFKQSQAQFADMYANSMNRSGNSPVGIGVS
VPAVAQQFTQGNISSSNNPLDIAINGDGFFQLSASLTNKSPMYGRNGQFQLDKSGYIVNP
SMNGAYLMGWAAGAQGGDPVPLQIDTSSIPATPTTTISTKVNLDSRLSVPTTTPFNAADP
TSYNSSTGVDLYDSLGNPYSMQTYYVKAAPTGTPPTTTWTVYAKIDNTTLNNGATPAVPV
ALGTMTFDSTGTMTQINGAAISPTNNTLTISTAQLATVAKAGGVFAAPINISYSGSTQTG
SAFVNLAQVQNGMPPGSLSSFSVDKDGSIIGSYSNQQTKNLGTVVLVNFANPNGLQPLGN
NLYQASSAAGSPLVGKPTTGTFGTLQARAKEDSNVDLTAELVNMIVAQRVYQANSQTIKV
QDTVLQTLVSLR