Protein Info for HSERO_RS09950 in Herbaspirillum seropedicae SmR1

Annotation: chain-length determining protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 466 transmembrane" amino acids 12 to 35 (24 residues), see Phobius details amino acids 395 to 417 (23 residues), see Phobius details TIGR03017: chain length determinant protein EpsF" amino acids 1 to 443 (443 residues), 561.9 bits, see alignment E=4.8e-173 PF02706: Wzz" amino acids 2 to 88 (87 residues), 28.6 bits, see alignment E=1.5e-10 PF13807: GNVR" amino acids 345 to 415 (71 residues), 30.4 bits, see alignment E=3.1e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_1991)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8ISE8 at UniProt or InterPro

Protein Sequence (466 amino acids)

>HSERO_RS09950 chain-length determining protein (Herbaspirillum seropedicae SmR1)
MNLSQFLLILRAHLKIILAIFGVTVVAALVVSLVLPKTYKATSSVVLNYKATDPVTGTMV
TAQALPGYMPTQVDIINSRSTALAVVDALKLAQDPAVKESYANSNSQLDIRNWLAGILLG
NLDAQASRDSSVIDITYKGRDPQTVATMANAFAEAYQQVSMQLKLDPTRKASAYFNDQIK
VLRENYEQAQAKLSKYQQEHGITNLDNRVDVENNRLNDLSTQLVAAQGALAEAQSRRQAA
GSAQNSPDVNANPLVQNLKANLAASEARFAQAAKRLGTQHPDYLNAKAEVDGLRAQLNAA
IAATSASVATNASILQKREAEIRSEFNAQKQKVLELNRTRDELSVLSRDLDSAQRAYELT
AQRFTQTNLEGQSNQSDISILASAMPPTAPSSPRLFINLILSMFVGLVLGVMAALGLELI
NRRVRSEADLVEGIGLPVLGTISHPAAQKGRDRRLGFGREPGAAPV