Protein Info for HSERO_RS09925 in Herbaspirillum seropedicae SmR1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 208 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 45 to 67 (23 residues), see Phobius details amino acids 77 to 97 (21 residues), see Phobius details amino acids 106 to 127 (22 residues), see Phobius details amino acids 134 to 153 (20 residues), see Phobius details amino acids 164 to 180 (17 residues), see Phobius details PF01569: PAP2" amino acids 79 to 151 (73 residues), 45.6 bits, see alignment E=2.9e-16

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_1986)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8ISE3 at UniProt or InterPro

Protein Sequence (208 amino acids)

>HSERO_RS09925 hypothetical protein (Herbaspirillum seropedicae SmR1)
MFGFLSQEWWHALSFFGDSALTVPGALVLALWLAANGRWRTMLRWLCAFGGAMMIVVVSK
LLFMGWHIVPPWLPNFTGVSGHSASAMCFYLGLGLLLSEGKSGTARAVTVSGAVLLAVTV
GLSRLAIKVHSPSEVITGLALGALAGAWFWLGLRGPAEVLRRRFVLVAFAAFMLAGSDAR
PAPTQQLLQQIALWLSGHERVYTRSEPL