Protein Info for HSERO_RS09735 in Herbaspirillum seropedicae SmR1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 459 TIGR01845: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family" amino acids 25 to 446 (422 residues), 284.2 bits, see alignment E=9.6e-89 PF02321: OEP" amino acids 46 to 236 (191 residues), 65.6 bits, see alignment E=2.7e-22 amino acids 263 to 444 (182 residues), 88.6 bits, see alignment E=2.3e-29

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_1951)

Predicted SEED Role

"RND efflux system, outer membrane lipoprotein CmeC" in subsystem Multidrug Resistance Efflux Pumps or Multidrug efflux pump in Campylobacter jejuni (CmeABC operon)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8ISB1 at UniProt or InterPro

Protein Sequence (459 amino acids)

>HSERO_RS09735 hypothetical protein (Herbaspirillum seropedicae SmR1)
LTAPLPPSALDLPTHYPRTLAEDAPANAAPTASAIGWQDYFPQAPLQALIAEALRHNPDL
RDIRLRLQQVQAQWRIQRSTGLPTVNLEAQARRSRGPLEPPESGPAASTREYRVGLGASS
WELDFWGRIASLNEAALQEWMASRAAEQALVISLIGQVAAAWTSLRELDERLHLLETLQA
ATAESLALMQARHDAGRADAAALAQQRSELAQMRAEQAELQQMRASQRSTLEMLAGLTQL
PAALEPAPTTILLPFALAPGLPSTLLAARPDIIAAEHRLQASAAQVAAARAAFFPRISLT
AFGGVASTALQDLFKGPSRAWNFVPEISLPLLDGGLRQSRYDIAALDQQRALLDYERTVQ
NAFREVAQRLEEAHWLKEQLRLRREVVQQQAQRQAQMHMRLRYGRASRLDVLESERDHLR
AQQRQHMLEHALLRNQIALYVALGGGTQALSASSPSQQE