Protein Info for HSERO_RS09725 in Herbaspirillum seropedicae SmR1

Annotation: ABC transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 913 transmembrane" amino acids 562 to 582 (21 residues), see Phobius details amino acids 718 to 741 (24 residues), see Phobius details amino acids 768 to 789 (22 residues), see Phobius details amino acids 797 to 819 (23 residues), see Phobius details amino acids 826 to 846 (21 residues), see Phobius details amino acids 886 to 908 (23 residues), see Phobius details PF00005: ABC_tran" amino acids 23 to 171 (149 residues), 94.6 bits, see alignment E=2.5e-30 amino acids 289 to 432 (144 residues), 97.9 bits, see alignment E=2.5e-31 PF13304: AAA_21" amino acids 137 to 201 (65 residues), 31.4 bits, see alignment 6e-11 PF12698: ABC2_membrane_3" amino acids 568 to 906 (339 residues), 131.2 bits, see alignment E=1.5e-41 PF12679: ABC2_membrane_2" amino acids 668 to 838 (171 residues), 29.5 bits, see alignment E=1.4e-10 PF01061: ABC2_membrane" amino acids 721 to 875 (155 residues), 47.6 bits, see alignment E=4.7e-16

Best Hits

Swiss-Prot: 62% identical to RBBA_ECOLI: Ribosome-associated ATPase (rbbA) from Escherichia coli (strain K12)

KEGG orthology group: K13926, ribosome-dependent ATPase (inferred from 67% identity to adk:Alide2_4418)

Predicted SEED Role

"ABC-type multidrug transport system, permease component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8ISA9 at UniProt or InterPro

Protein Sequence (913 amino acids)

>HSERO_RS09725 ABC transporter (Herbaspirillum seropedicae SmR1)
MTAPICAARVHDVSHSYGKNPALSHVELDIPGGCMAGLIGPDGVGKSTLLSLIAGARRIR
AGRIDVLGGDIGQAAHRDAVGPCIAYMPQGLGKNLYPTLSVEENLQFIARLFGQDAQERR
QRIDDLTHSTGLQPFLARPAGQLSGGMKQKLSLCCALIHDPDLLILDEPTTGVDPLARAQ
FWELIARLRQRHPGMSVIVATAYMDEAQAFDWLAVMDQGQVLATGTPAALLARTGASSLE
RAFIALLPAHRKAGHEALSIPPLETHADDIAIEAENLSMRFADGFTAVDHVSFRIRRGEI
FGFLGSNGCGKTTTMKMLTGLLPASSGRARLFGQEIDPRDVCLRKRVGYMSQSFSLYKDL
SVRQNLALHARLFHLPAAQIGPRVAEMARRFALMPVMDSLAADLPMGIRQRLSLAVATIH
GPEILILDEPTSGVDPVARDHFWQLLVTLSRRDKVTIFLSTHFMNEALRCDRMSMMHAGK
VLDSDTPAALMHKRGAATLEQAFIGYLVQAGQDEKHAPGQSRQTAAMPPGLPSHPAPPTS
FSWQRMLSYAWREALELRRDPVRATMALLGSLLLMFVIGYGISTDVNGLPYAVLDQDQSS
ASRDYAAALRASPYFQERAPLQGPAQLDKRMRNGELTLAIEIPSGFGRRLAAGRQVEIGA
WINGAMPSRAETVQAYVQGMHQHWLEQRQQRLQGRPQTPALEIQTRLRYNADLRSLPAIL
PAVIPLLLLTLPAMLTALAVVREKELGAIINFYVTPVTRLEFLCGKQLPYIALGMFNFLL
MSMAAVTLLELPVKGSYAALALATLVYLVIATGMGLVASALTRSQIAAMFAALLGTLVPA
TQFAGMTTPVSALEGMGRLVGDIHPATHMFLISRGVYVKALGLADVATSLALLLATLPVV
MGLAVLMLRKQEG