Protein Info for HSERO_RS09670 in Herbaspirillum seropedicae SmR1

Annotation: DNA repair protein RecO

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 286 TIGR00613: DNA repair protein RecO" amino acids 57 to 216 (160 residues), 112.3 bits, see alignment E=1.3e-36 PF11967: RecO_N" amino acids 57 to 128 (72 residues), 78.9 bits, see alignment E=2.3e-26 PF02565: RecO_C" amino acids 137 to 277 (141 residues), 66.2 bits, see alignment E=3.2e-22

Best Hits

Swiss-Prot: 65% identical to RECO_RALSO: DNA repair protein RecO (recO) from Ralstonia solanacearum (strain GMI1000)

KEGG orthology group: K03584, DNA repair protein RecO (recombination protein O) (inferred from 100% identity to hse:Hsero_1938)

Predicted SEED Role

"DNA recombination and repair protein RecO" in subsystem DNA repair, bacterial RecFOR pathway

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8ISA2 at UniProt or InterPro

Protein Sequence (286 amino acids)

>HSERO_RS09670 DNA repair protein RecO (Herbaspirillum seropedicae SmR1)
MTTMLTESQLDSQADPANAVAPAVAPQAPAKTPARKTAAPRARSRAVPEKEHKVLAQPGF
VLHSYPYKETSLIIDVFSRDHGRVALVAKGAKRPHSKLRGALQTFQPLSLSWSGKSEVRT
LTDAEWVGGLLPLEKSALLCGFYLNELLVKLLAREDAHPALFDHYVATLNKLAHGENAPI
VLRQFERILLKQTGVAGNWSHCVVSGKTVRPDLIYVVDPEQGTRPERLSDRAPKVSGKTL
LDMEREDYSDPTTQLQSKFLMRYLLAHHLGGAQLNTRQILIDLMQL