Protein Info for HSERO_RS09390 in Herbaspirillum seropedicae SmR1

Annotation: recombinase RmuC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 488 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF02646: RmuC" amino acids 180 to 471 (292 residues), 264.2 bits, see alignment E=6.4e-83

Best Hits

Swiss-Prot: 52% identical to RMUC_XYLFA: DNA recombination protein RmuC homolog (rmuC) from Xylella fastidiosa (strain 9a5c)

KEGG orthology group: K09760, DNA recombination protein RmuC (inferred from 100% identity to hse:Hsero_1881)

Predicted SEED Role

"DNA recombination protein RmuC" in subsystem DNA repair, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IRR6 at UniProt or InterPro

Protein Sequence (488 amino acids)

>HSERO_RS09390 recombinase RmuC (Herbaspirillum seropedicae SmR1)
MILAGLVVAGIVLQVLVLLRSGQREEVGAEVEEMLAHMQQVLQRHQQDIGERIERELRSQ
VQASAQSTRQELGASFAQLQQTLATQMASVASLQNQQIDGFAQQLVKLNETNAQQLDSMR
QSITLQAQVSREEQAVSLKRFGDTLNQQLSALTESNAQRMGEVRATLEAKIKDLQTDNAQ
KLDEMRKTVDEKLHATLEQRLGESFKLVSDRLDKVHQGLGEMQQLATGVGDLKRVLTNVK
TRGTWGEVQLEILLEQMLTPEQYGKNVETVRGSGERVEFAIRLPGAKEEGEPVWMPIDAK
FPKEQYERLVEAAERADADGVAAAGKELERAVRTEARTIAEKYLSPPLTTDFAILFLPTE
GLYAEVMRRPGLSDDLQRSCRVTIAGPSTLSALLNSLQMGFRTLALEKRSSEVWQVLGAV
KTEFGKFGEVLASTKTALERAARNIDQAETRTRQMTRKLKSVEALPADAAQKLLGAAEPE
LGESDEAL